# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qdrA 303 4.73e-19 1tq5A 242 1.64e-15 b.82.1.12 119311 2vecA 256 9.32e-15 2p17A 277 9.68e-15 1rc6A 261 3.71e-14 b.82.1.11 97287 1sefA 274 4.36e-14 b.82.1.11 105452 3cjxA 165 1.64e-13 1j1lA 290 2.21e-13 b.82.1.12 90766 2o1qA 145 6.74e-13 b.82.1.21 148547 3ebrA 159 1.08e-12 1sfnA 246 2.00e-11 b.82.1.11 105496 2phdA 368 5.12e-11 b.82.1.23 149468 2pfwA 116 6.32e-11 3kgzA 156 8.32e-11 2q1zB 195 1.39e-10 2d40A 354 1.69e-10 b.82.1.23 146454 1vj2A 126 2.17e-10 b.82.1.10 100796 2oa2A 148 2.50e-10 1juhA 350 3.12e-10 b.82.1.5 71884 3ibmA 167 3.20e-10 3ht1A 145 5.76e-10 2h0vA 338 7.54e-10 1y3tA 337 8.43e-10 b.82.1.5 122600 1o4tA 133 9.85e-10 b.82.1.9 86622 3h8uA 125 1.10e-09 3i7dA 163 1.35e-09 3cewA 125 1.58e-09 2ozjA 114 2.17e-09 1v70A 105 2.37e-09 b.82.1.9 113555 2vqaA 361 2.77e-09 2et1A 201 4.50e-09 b.82.1.2 132351 1lr5A 163 5.24e-09 b.82.1.2 74215 3h7jA 243 5.43e-09 1j58A 385 6.43e-09 b.82.1.2 71531 2q30A 110 8.70e-09 2b8mA 117 9.02e-09 b.82.1.18 128092 3l2hA 162 9.10e-09 2qnkA 286 1.11e-08 2gu9A 113 1.30e-08 2gc1A 188 1.33e-08 b.82.1.7 134928 2o8qA 134 1.55e-08 1yhfA 115 1.59e-08 b.82.1.9 123176 3c3vA 510 2.36e-08 3fz3A 531 4.53e-08 3es1A 172 4.98e-08 2d5fA 493 6.00e-08 1fi2A 201 6.26e-08 b.82.1.2 59845 2e9qA 459 8.24e-08 2pytA 133 2.17e-07 b.82.1.24 149957 1y9qA 192 2.38e-07 a.35.1.8,b.82.1.15 116592,116593 1x82A 190 2.50e-07 b.82.1.7 114955 3lwcA 119 2.63e-07 3eqeA 171 4.06e-07 2atfA 200 5.06e-07 b.82.1.19 127290 3fjsA 114 6.14e-07 3elnA 200 6.53e-07 b.82.1.19 158185 2b5hA 200 9.39e-07 b.82.1.19 127894 2ea7A 434 1.13e-06 1od5A 492 1.22e-06 b.82.1.2,b.82.1.2 86832,86833 1dgwA 178 1.72e-06 b.82.1.2 28090 3d82A 102 2.16e-06 1cauB 184 3.00e-06 b.82.1.2 28103 2phlA 397 3.80e-06 b.82.1.2,b.82.1.2 28082,28083 2oziA 98 3.87e-06 3lagA 98 4.47e-06 2f4pA 147 1.18e-05 b.82.1.9 132933 2fqpA 97 1.93e-05 2gm6A 208 2.46e-05 b.82.1.19 147130 1xjaA 178 2.53e-05 b.82.4.1 115382 3bcwA 123 7.35e-05 2bnmA 198 9.57e-05 a.35.1.3,b.82.1.10 128835,128836 1qxrA 189 0.000129 b.82.1.7 96552 3g7dA 443 0.000148 2i45A 107 0.000319 1yfuA 174 0.000479 b.82.1.20 123094 1zrrA 179 0.001253 b.82.1.6 125555 1vr3A 191 0.001263 b.82.1.6 120431 1zvfA 176 0.001743 b.82.1.20 146029 2opkA 112 0.004872 2pamA 141 0.007865 b.82.1.1 149348 3d0jA 140 0.009750 3esgA 193 0.01223 2pa7A 141 0.01679 b.82.1.1 149339 2vpvA 166 0.02680 3gbgA 276 0.03132 1zx5A 300 0.04515 b.82.1.3 125763 2qvsB 310 0.05147 3ejkA 174 0.1398 3h1wA 393 0.1511 3bpzA 202 0.1954 1rl3A 288 0.3602 b.82.3.2,b.82.3.2 104975,104976 1vrbA 342 0.4329 b.82.2.11 120450 2wfpA 394 0.4722 2ptmA 198 0.6132 1e5rA 290 0.6854 b.82.2.4 59276 2d93A 134 0.8034 3es4A 116 0.8479 2arcA 164 1.165 b.82.4.1 28148 3k3oA 371 1.340 3fhiB 154 1.387 1qwrA 319 1.582 b.82.1.3 96491 3hqxA 111 1.756 2wwuA 371 2.124 1omiA 248 2.427 b.82.3.3,a.4.5.4 87079,87080 1q3eA 207 2.465 b.82.3.2 95669 3d8cA 349 3.107 2rg4A 216 3.495 1ne6A 283 3.746 b.82.3.2,b.82.3.2 91831,91832 2fmyA 220 5.562 1o5uA 101 5.921 b.82.1.8 92518 3idbB 161 6.460 2z69A 154 6.858 2yu1A 451 7.355 1pmiA 440 7.422 b.82.1.3 28114 3gydA 187 8.059 2h6bA 250 8.553 a.4.5.4,b.82.3.2 147228,147229 3eo6A 106 9.683 1vp6A 138 10.90 b.82.3.2 113939 2bgcA 238 10.96 a.4.5.4,b.82.3.3 128458,128459 1xruA 282 13.72 b.82.1.13 122262 2oyzA 94 15.86 b.82.1.22 149082 3cf6E 694 17.16 3bb6A 127 17.61 b.82.2.13 155045 2c0zA 216 18.34 b.82.1.1 129615 2a1xA 308 19.31 b.82.2.9 126022 1h2kA 349 19.56 b.82.2.6 76572 1wgpA 137 21.33 b.82.3.2 114619 3e97A 231 21.59 1i7pA 274 22.00 b.43.4.2,c.25.1.1 66048,66049 1eybA 471 22.48 b.82.1.4 28115 3k2oA 336 23.34 1h4rA 314 24.26 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1cx4A 305 25.24 b.82.3.2,b.82.3.2 59099,59100 1a70A 97 27.63 d.15.4.1 37678 1zybA 232 27.70 a.4.5.4,b.82.3.2 125815,125816 2gauA 232 27.77 a.4.5.4,b.82.3.2 134894,134895 3h3zA 235 27.85 1awdA 94 28.05 d.15.4.1 37673 3dl3A 119 29.98 b.82.2.13 157762 2hbtA 247 30.01 3dn7A 194 30.64 2himA 358 31.91 2ajuH 219 32.89 1czpA 98 33.80 d.15.4.1 37645 1offA 97 38.70 d.15.4.1 86947 2irfG 113 39.55 a.4.5.23 16185 3gbnA 331 40.26 2ok8A 316 41.41 1bec 238 41.91 2j7tA 302 42.54 1becA 238 45.27 b.1.1.1,b.1.1.2 20627,21561 1hw5A 210 46.17 a.4.5.4,b.82.3.2 16098,28137 1rd8A 335 47.78 b.19.1.2 97308 2qt5A 200 48.14 1frdA 98 48.55 d.15.4.1 37648 2ixkA 184 49.16 1ruzH 328 51.39 b.19.1.2 97889 2pqqA 149 53.18 1frrA 95 53.48 d.15.4.1 37674 1zanH 224 53.78 2wqkA 251 54.90 3fx3A 237 56.71 3mgaA 407 58.32 1yllA 200 59.60 b.82.1.17 123653 1uirA 314 61.71 c.66.1.17 99429 1iueA 98 64.53 d.15.4.1 90697 2h6cA 232 67.97 a.4.5.4,b.82.3.2 147232,147233 2cclA 158 68.22 b.2.2.2 130248 1tjgH 237 68.59 b.1.1.1,b.1.1.2 112446,112447 1nf3C 128 70.90 b.36.1.1 85596 2we3A 264 75.21 3gz5A 240 79.63 1ru4A 400 80.42 b.80.1.9 97836 2uvfA 608 82.02 1i6xA 209 83.05 a.4.5.4,b.82.3.2 83673,83674 1sbp 310 83.87 3ll7A 410 85.63 1doiA 128 88.16 d.15.4.1 37676 3fzeA 196 88.63 1aipA 405 88.93 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2qf7A 1165 88.96