# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qdrA 303 9.56e-16 2vecA 256 9.51e-13 2p17A 277 9.84e-13 1tq5A 242 1.19e-12 b.82.1.12 119311 1j1lA 290 2.72e-12 b.82.1.12 90766 1rc6A 261 4.87e-12 b.82.1.11 97287 1sefA 274 1.07e-11 b.82.1.11 105452 3cjxA 165 3.26e-11 2o1qA 145 7.33e-11 b.82.1.21 148547 3ebrA 159 2.09e-10 2phdA 368 4.33e-10 b.82.1.23 149468 1juhA 350 7.46e-10 b.82.1.5 71884 1sfnA 246 9.59e-10 b.82.1.11 105496 2d40A 354 1.76e-09 b.82.1.23 146454 2pfwA 116 3.43e-09 2q1zB 195 3.66e-09 3kgzA 156 5.14e-09 1vj2A 126 5.67e-09 b.82.1.10 100796 3cewA 125 7.51e-09 1y3tA 337 1.26e-08 b.82.1.5 122600 3ht1A 145 1.55e-08 2oa2A 148 1.57e-08 2h0vA 338 2.20e-08 3ibmA 167 2.25e-08 3i7dA 163 2.42e-08 3h8uA 125 2.75e-08 1o4tA 133 2.89e-08 b.82.1.9 86622 2ozjA 114 3.23e-08 2vqaA 361 4.43e-08 1v70A 105 5.26e-08 b.82.1.9 113555 2et1A 201 5.60e-08 b.82.1.2 132351 2q30A 110 7.19e-08 1lr5A 163 7.30e-08 b.82.1.2 74215 1j58A 385 9.35e-08 b.82.1.2 71531 3c3vA 510 1.34e-07 2e9qA 459 1.42e-07 1yhfA 115 1.45e-07 b.82.1.9 123176 3h7jA 243 1.75e-07 3l2hA 162 2.41e-07 2gc1A 188 2.43e-07 b.82.1.7 134928 2gu9A 113 2.92e-07 3es1A 172 3.03e-07 2o8qA 134 3.28e-07 2qnkA 286 3.57e-07 3fz3A 531 4.15e-07 2b8mA 117 4.16e-07 b.82.1.18 128092 1fi2A 201 6.15e-07 b.82.1.2 59845 2d5fA 493 8.99e-07 3lwcA 119 1.70e-06 1od5A 492 2.11e-06 b.82.1.2,b.82.1.2 86832,86833 1y9qA 192 2.92e-06 a.35.1.8,b.82.1.15 116592,116593 2pytA 133 2.98e-06 b.82.1.24 149957 2ea7A 434 3.29e-06 3lagA 98 4.71e-06 1x82A 190 4.75e-06 b.82.1.7 114955 3d82A 102 6.10e-06 3fjsA 114 6.71e-06 3eqeA 171 6.72e-06 2atfA 200 7.90e-06 b.82.1.19 127290 2oziA 98 8.48e-06 3elnA 200 1.48e-05 b.82.1.19 158185 2fqpA 97 1.81e-05 2b5hA 200 2.08e-05 b.82.1.19 127894 1cauB 184 3.23e-05 b.82.1.2 28103 1dgwA 178 5.08e-05 b.82.1.2 28090 2phlA 397 5.12e-05 b.82.1.2,b.82.1.2 28082,28083 3bcwA 123 8.01e-05 2f4pA 147 9.96e-05 b.82.1.9 132933 1xjaA 178 0.000141 b.82.4.1 115382 2gm6A 208 0.000218 b.82.1.19 147130 2bnmA 198 0.000311 a.35.1.3,b.82.1.10 128835,128836 1qxrA 189 0.000321 b.82.1.7 96552 3g7dA 443 0.000713 1vr3A 191 0.001392 b.82.1.6 120431 2i45A 107 0.001512 1zrrA 179 0.002607 b.82.1.6 125555 2opkA 112 0.003704 1yfuA 174 0.003798 b.82.1.20 123094 2pamA 141 0.004480 b.82.1.1 149348 3d0jA 140 0.006346 2vpvA 166 0.008081 2pa7A 141 0.009888 b.82.1.1 149339 1zvfA 176 0.01447 b.82.1.20 146029 1zx5A 300 0.01949 b.82.1.3 125763 3k3oA 371 0.03636 2wwuA 371 0.07022 2yu1A 451 0.07482 3d8cA 349 0.07866 3h1wA 393 0.1098 3esgA 193 0.1284 3ejkA 174 0.1497 3gbgA 276 0.1501 2qvsB 310 0.2052 3es4A 116 0.2507 1rl3A 288 0.3057 b.82.3.2,b.82.3.2 104975,104976 1h2kA 349 0.4940 b.82.2.6 76572 2ptmA 198 0.5827 3bpzA 202 0.6020 2wfpA 394 0.6420 3fhiB 154 0.9005 2arcA 164 0.9531 b.82.4.1 28148 1e5rA 290 0.9555 b.82.2.4 59276 2d93A 134 1.210 1ne6A 283 1.293 b.82.3.2,b.82.3.2 91831,91832 1vrbA 342 1.362 b.82.2.11 120450 3idbB 161 1.693 3k2oA 336 1.797 2fmyA 220 1.858 1o7fA 469 2.000 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1omiA 248 2.301 b.82.3.3,a.4.5.4 87079,87080 1pmiA 440 2.328 b.82.1.3 28114 2rg4A 216 2.466 2bgcA 238 2.852 a.4.5.4,b.82.3.3 128458,128459 1o5uA 101 3.488 b.82.1.8 92518 1pmi 440 3.570 1vp6A 138 3.905 b.82.3.2 113939 3gydA 187 4.203 3eo6A 106 4.377 1q3eA 207 4.455 b.82.3.2 95669 1qwrA 319 4.542 b.82.1.3 96491 3hqxA 111 4.646 2z69A 154 5.325 2c0zA 216 5.684 b.82.1.1 129615 3bb6A 127 5.751 b.82.2.13 155045 2oyzA 94 6.815 b.82.1.22 149082 1nxmA 197 6.956 b.82.1.1 86385 2h6bA 250 7.967 a.4.5.4,b.82.3.2 147228,147229 2a1xA 308 7.982 b.82.2.9 126022 3dn7A 194 10.06 2ixkA 184 10.65 1mdoA 393 11.03 c.67.1.4 79013 1wgpA 137 12.28 b.82.3.2 114619 2gauA 232 13.22 a.4.5.4,b.82.3.2 134894,134895 1zybA 232 13.61 a.4.5.4,b.82.3.2 125815,125816 2pqqA 149 13.86 1cx4A 305 14.29 b.82.3.2,b.82.3.2 59099,59100 3e97A 231 14.58 1hw5A 210 15.29 a.4.5.4,b.82.3.2 16098,28137 3dl3A 119 17.24 b.82.2.13 157762 1oi6A 205 18.15 b.82.1.1 103940 2z72A 342 18.77 3fzeA 196 19.04 3cf6E 694 19.39 1uarA 285 21.67 c.46.1.2,c.46.1.2 107762,107763 2ojhA 297 22.56 1eybA 471 23.80 b.82.1.4 28115 3mdpA 142 25.49 3fdyA 623 25.50 1upiA 225 30.00 b.82.1.1 99757 1rcy 151 31.64 1s4cA 155 32.47 b.82.2.7 118860 1uirA 314 34.36 c.66.1.17 99429 3e6cC 250 35.93 a.4.5.4,b.82.3.2 158038,158039 3i1cA 324 37.09 2nqrA 411 38.46 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 1b6aA 478 38.53 a.4.5.25,d.127.1.1 16223,41160 2qmaA 497 38.96 2zklA 369 41.16 3emrA 310 41.45 2gokA 429 44.23 b.92.1.10,c.1.9.17 147145,147146 1wbhA 214 46.47 c.1.10.1 120845 2cohA 202 46.56 a.4.5.4,b.82.3.2 130677,130678 1l5jA 865 46.91 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1o6gA 710 50.38 b.69.7.1,c.69.1.4 81087,81088 1becA 238 51.23 b.1.1.1,b.1.1.2 20627,21561 1ywkA 289 51.83 b.82.1.13 124155 3h3zA 235 52.77 2rftA 344 54.54 1oh4A 179 54.67 b.18.1.18 92978 2qv7A 337 55.41 e.52.1.2 151386 1fnc 314 55.53 1i6xA 209 57.11 a.4.5.4,b.82.3.2 83673,83674 3dr7A 391 58.23 2we3A 264 58.88 2hqsA 415 61.14 b.68.4.1,c.51.2.1 136662,136663 2b9uA 176 61.57 1xl4A 301 62.38 b.1.18.16,f.14.1.1 115430,115431 1ep0A 185 63.25 b.82.1.1 28080 3e5xA 250 64.37 2qt5A 200 64.37 3bcxA 437 64.62 1a70A 97 64.76 d.15.4.1 37678 1awdA 94 65.23 d.15.4.1 37673 1czpA 98 65.40 d.15.4.1 37645 3d0sA 227 66.02 1gg4A 452 66.81 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1o5lA 213 68.35 b.82.3.2 92506 3aayA 277 70.14 1nnwA 252 71.19 d.159.1.5 80674 1yllA 200 72.89 b.82.1.17 123653 3ce1A 168 73.65 1xruA 282 73.68 b.82.1.13 122262 2hoxA 427 74.03 c.67.1.1 136644 1zglP 249 74.61 b.1.1.1,b.1.1.2 125047,125048 2bceA 585 76.89 c.69.1.1 34625 3fx3A 237 78.17 1k5jA 124 79.96 b.121.3.1 68201 1frrA 95 82.91 d.15.4.1 37674 1v10A 521 83.15 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1ogaE 252 84.88 b.1.1.1,b.1.1.2 86992,86993