# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2q1zB 195 1.39e-18 2f4pA 147 2.46e-12 b.82.1.9 132933 1vj2A 126 9.53e-12 b.82.1.10 100796 3ht1A 145 5.34e-11 3ebrA 159 1.02e-10 3cjxA 165 1.58e-09 2o1qA 145 2.50e-09 b.82.1.21 148547 1o4tA 133 2.63e-09 b.82.1.9 86622 2pfwA 116 7.17e-09 1j58A 385 3.50e-08 b.82.1.2 71531 3h8uA 125 5.58e-08 3d82A 102 1.70e-07 2q30A 110 1.99e-07 1tq5A 242 2.24e-07 b.82.1.12 119311 2qdrA 303 3.95e-07 1y3tA 337 5.95e-07 b.82.1.5 122600 3cewA 125 6.55e-07 2vqaA 361 6.55e-07 1fi2A 201 7.81e-07 1fi2A b.82.1.2 59845 2h0vA 338 7.95e-07 2et1A 201 1.23e-06 b.82.1.2 132351 1lr5A 163 1.63e-06 b.82.1.2 74215 1v70A 105 1.68e-06 b.82.1.9 113555 1sfnA 246 3.04e-06 b.82.1.11 105496 3h7jA 243 2.22e-05 3i7dA 163 3.17e-05 3fjsA 114 3.47e-05 2i45A 107 3.48e-05 3l2hA 162 4.00e-05 1yhfA 115 4.30e-05 b.82.1.9 123176 2p17A 277 5.61e-05 2d40A 354 6.24e-05 b.82.1.23 146454 1rc6A 261 7.84e-05 b.82.1.11 97287 3lwcA 119 1.09e-04 1vr3A 191 1.72e-04 b.82.1.6 120431 2gm6A 208 2.21e-04 b.82.1.19 147130 2o8qA 134 2.33e-04 3kgzA 156 2.60e-04 2pytA 133 4.22e-04 b.82.1.24 149957 3es1A 172 4.61e-04 1yfuA 174 5.52e-04 b.82.1.20 123094 1sefA 274 6.73e-04 b.82.1.11 105452 2bnmA 198 1.24e-03 a.35.1.3,b.82.1.10 128835,128836 3eqeA 171 2.64e-03 2fqpA 97 2.66e-03 2opkA 112 2.72e-03 3es4A 116 3.22e-03 2phdA 368 4.22e-03 b.82.1.23 149468 1zvfA 176 5.87e-03 b.82.1.20 146029 1xjaA 178 8.07e-03 b.82.4.1 115382 2arcA 164 1.02e-02 2arcA b.82.4.1 28148 3lagA 98 1.13e-02 2aacA 177 1.30e-02 2arcA b.82.4.1 28150 3ibmA 167 1.45e-02 2oziA 98 1.87e-02 2ozjA 114 2.10e-02 1j1lA 290 2.18e-02 b.82.1.12 90766 2zklA 369 3.19e-02 1o5uA 101 3.63e-02 b.82.1.8 92518 2e9qA 459 5.68e-02 1vp6A 138 8.13e-02 b.82.3.2 113939 3dl3A 119 1.18e-01 b.82.2.13 157762 3eo6A 106 1.26e-01 2gc1A 188 1.80e-01 b.82.1.7 134928 1x82A 190 2.40e-01 b.82.1.7 114955 2d5fA 493 2.94e-01 1od5A 492 3.10e-01 b.82.1.2,b.82.1.2 86832,86833 1qxrA 189 3.33e-01 b.82.1.7 96552 2cavA 445 3.75e-01 1dgwA b.82.1.2,b.82.1.2 28094,28095 1dgwA 178 7.04e-01 1dgwA b.82.1.2 28090 3jv1A 182 7.83e-01 1zrrA 179 8.82e-01 b.82.1.6 125555 3fpxA 499 9.56e-01 1s7hA 200 9.74e-01 d.58.48.2 105349 1pg6A 243 9.86e-01 b.82.5.2 94673 1rgs 288 1.04e+00 1rgs 1cauA 181 1.26e+00 1dgwA b.82.1.2 28102 1vrbA 342 1.42e+00 b.82.2.11 120450 1juhA 350 1.42e+00 b.82.1.5 71884 1s99A 200 1.48e+00 d.58.48.2 112046 2gu9A 113 1.68e+00 1y9qA 192 1.75e+00 a.35.1.8,b.82.1.15 116592,116593 2b8mA 117 1.78e+00 b.82.1.18 128092 1f08A 148 1.81e+00 1f08A d.89.1.2 59564 1ksyA 154 1.92e+00 d.89.1.2 72948 1ne6A 283 1.94e+00 b.82.3.2,b.82.3.2 91831,91832 3hqxA 111 2.51e+00 1x9bA 53 2.97e+00 a.10.2.1 114982 2wr8A 259 2.99e+00 1qwrA 319 3.54e+00 b.82.1.3 96491 3iteA 562 3.73e+00 3kl9A 355 3.91e+00 1ujxA 119 4.25e+00 b.26.1.2 99473 1q5yA 85 4.62e+00 d.58.18.4 95950 1ep0A 185 5.01e+00 1dzrA b.82.1.1 28080 2b9uA 176 5.23e+00 1e5rA 290 5.52e+00 1e5rA b.82.2.4 59276 1rl3A 288 5.77e+00 b.82.3.2,b.82.3.2 104975,104976 1xfjA 261 5.81e+00 d.194.1.2 109585 2z0tA 109 5.82e+00 3c3vA 510 5.88e+00 3k50A 403 6.05e+00 1sixA 174 6.11e+00 b.85.4.1 98892 2e26A 725 6.49e+00 3a7qA 725 6.76e+00 2brfA 110 6.83e+00 b.26.1.2 128996 3bkzA 201 6.89e+00 1fxzA 476 7.05e+00 b.82.1.2,b.82.1.2 65059,65060 3kg0A 128 7.30e+00 3hzaA 174 7.67e+00 2qnkA 286 7.89e+00 3bcwA 123 7.91e+00 3i4wA 104 7.94e+00 2ea7A 434 8.13e+00 3divA 499 8.21e+00 2j7vA 298 8.66e+00 3ljyA 243 9.29e+00 2yu1A 451 9.87e+00 2vecA 256 9.90e+00 3l51A 161 1.12e+01 3c8eA 288 1.12e+01 2fdiA 211 1.13e+01 b.82.2.10 133311 1e0aB 46 1.13e+01 1e0aB j.65.1.1 46357 1jlyA 304 1.16e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1h3iA 293 1.19e+01 b.76.2.1,b.85.7.1 76635,76636 1n27A 96 1.20e+01 b.34.9.2 91549 2c4nA 250 1.20e+01 c.108.1.14 129837 1k28A 584 1.23e+01 b.40.8.1,b.108.1.2,d.2.1.3 68049,68050,68051 3i3qA 211 1.26e+01 1nltA 248 1.28e+01 b.4.1.1,b.4.1.1,g.54.1.1 91963,91964,91965 2j9oA 298 1.35e+01 1wdvA 152 1.47e+01 d.116.1.1 114539 3k3oA 371 1.47e+01 2gnqA 336 1.49e+01 1zhvA 134 1.51e+01 d.58.18.8,d.58.18.8 125109,125110 1q01A 38 1.54e+01 1r3eA 309 1.57e+01 b.122.1.1,d.265.1.2 96907,96908 3bb6A 127 1.64e+01 b.82.2.13 155045 2ckkA 127 1.64e+01 3k82A 98 1.67e+01 1o97D 320 1.70e+01 c.26.2.3,c.31.1.2 81233,81234 1aipA 405 1.73e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2nysA 176 1.73e+01 b.136.1.2 148518 2wx6A 388 1.75e+01 1whzA 70 1.76e+01 d.50.3.2 114656 3eu9A 240 1.78e+01 2wwuA 371 1.80e+01 2nxcA 254 1.80e+01 c.66.1.39 138739 1qtrA 317 1.81e+01 1qtrA c.69.1.7 34660 3fz3A 531 1.84e+01 1we0A 187 1.90e+01 c.47.1.10 120930 2h14A 317 1.91e+01 2i24N 121 1.98e+01 2kvcA 103 2.07e+01 1mt6A 280 2.19e+01 b.76.2.1,b.85.7.1 79446,79447 3cwqA 209 2.26e+01 3emhA 318 2.32e+01 1wm1A 317 2.38e+01 c.69.1.7 109405 2wiiA 645 2.42e+01 3jz0A 287 2.47e+01 1wouA 123 2.50e+01 c.47.1.16 109471 1mq7A 154 2.51e+01 b.85.4.1 79404 2a5jA 191 2.51e+01 c.37.1.8 126175 2arpA 116 2.53e+01 g.17.1.2 127217 1prs 173 2.54e+01 1prs 2x8uA 412 2.57e+01 2ihyA 279 2.59e+01 3d6mB 89 2.83e+01 1v73A 342 3.01e+01 3gdpA 521 3.04e+01 1npsA 88 3.17e+01 1prs b.11.1.1 23622 2pzmA 330 3.19e+01 1l8rA 101 3.19e+01 a.6.1.4 73700 3d6fB 89 3.20e+01 2a74A 643 3.22e+01 3l6dA 306 3.23e+01 3kgkA 110 3.25e+01 1sc3B 88 3.27e+01 1xdwA 331 3.27e+01 1ep2B 261 3.37e+01 1ep2B b.43.4.2,c.25.1.3 25666,31556 2cwrA 103 3.43e+01 3kdeC 77 3.46e+01 1p3wA 404 3.46e+01 c.67.1.3 87752 2zxeB 305 3.51e+01 1yjmA 110 3.52e+01 b.26.1.2 123427 2p0oA 372 3.54e+01 3llwA 311 3.55e+01 2h5uA 499 3.56e+01 2z72A 342 3.57e+01 1reqB 637 3.66e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1ju2A 536 3.67e+01 c.3.1.2,d.16.1.1 77169,77170 1xk5A 204 3.71e+01 1efm 393 3.77e+01 1efcA 2oa2A 148 3.85e+01 3lvmA 423 3.88e+01 1eesB 46 3.90e+01 1eesB j.65.1.1 46356 1ep3B 262 3.98e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1yzbA 182 3.99e+01 2gbbA 156 4.08e+01 1ep1B 261 4.12e+01 1ep2B b.43.4.2,c.25.1.3 25665,31555 3hz7A 87 4.22e+01 1ibcB 88 4.23e+01 1pauB 3dm3A 105 4.28e+01 1f39A 101 4.37e+01 1umuA b.87.1.1 28386 3hvzA 78 4.59e+01 1v8qA 85 4.63e+01 b.84.4.1 108428 1znpA 154 4.71e+01 b.82.1.16 125394 1d2mA 665 4.91e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1wgpA 137 4.98e+01 b.82.3.2 114619 2a1iA 146 5.05e+01 c.52.1.20 125999 2cg7A 90 5.14e+01 g.27.1.1,g.27.1.1 130423,130424 2j3xA 431 5.31e+01 2e5eA 101 5.48e+01 1aqt 138 5.52e+01 1aqt 3hy3A 203 5.56e+01 2ej9A 237 5.58e+01 2qt5A 200 5.69e+01 2cviA 83 5.72e+01 2z8lA 208 5.77e+01 b.40.2.2,d.15.6.1 154209,154210 2wm2A 279 5.83e+01 2r47A 157 5.87e+01 2e7dA 131 5.87e+01 1kgsA 225 6.01e+01 a.4.6.1,c.23.1.1 68596,68597 1ztpA 251 6.04e+01 d.86.1.2 125649 1r1a1 287 6.07e+01 1aym1 2agaA 190 6.08e+01 1lt5D 103 6.17e+01 3chbD b.40.2.1 24875 1qr4A 186 6.19e+01 1qr4B b.1.2.1,b.1.2.1 21986,21987 2pqmA 343 6.29e+01 1tp5A 119 6.34e+01 b.36.1.1 119305 2zkdA 210 6.39e+01 b.122.1.12 154583 3h9xA 125 6.48e+01 2gf9A 189 6.52e+01 3l56A 222 6.54e+01 3g6jA 644 6.66e+01 3c3jA 384 6.74e+01 1m0uA 249 6.83e+01 a.45.1.1,c.47.1.5 78359,78360 2vycA 755 6.88e+01 3dzbA 317 6.99e+01 2wgoA 98 7.01e+01 3dcaA 142 7.02e+01 2xbnA 427 7.07e+01 2e74A 215 7.11e+01 f.21.1.2 132048 1f3mA 80 7.12e+01 1f3mA j.66.1.1 46358 1gmuA 143 7.14e+01 b.107.1.1,d.58.38.1 65335,65336 2g6bA 180 7.27e+01 c.37.1.8 134701 2dbhA 102 7.30e+01 3fdeA 212 7.32e+01 3liuA 402 7.46e+01 2wj6A 276 7.57e+01 2inuA 410 7.57e+01 3pviA 157 7.60e+01 3pviA c.52.1.6 33300 3bi7A 212 7.67e+01 b.122.1.12 155298 2z6fA 131 7.67e+01 2aelA 374 7.70e+01 3km3A 206 7.76e+01 1yukA 103 7.78e+01 3iutA 221 7.79e+01 2z69A 154 7.84e+01 1dxeA 256 7.96e+01 1dxeA c.1.12.5 29310