# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2q1zB 195 4.13e-10 1tq5A 242 5.29e-07 b.82.1.12 119311 1j58A 385 7.04e-07 b.82.1.2 71531 2qdrA 303 1.33e-06 3cjxA 165 2.02e-06 2f4pA 147 2.19e-06 b.82.1.9 132933 1vj2A 126 4.84e-06 b.82.1.10 100796 3ebrA 159 5.64e-06 2o1qA 145 2.86e-05 b.82.1.21 148547 2pfwA 116 3.12e-05 3ht1A 145 3.64e-05 1o4tA 133 5.68e-05 b.82.1.9 86622 1lr5A 163 7.78e-05 b.82.1.2 74215 2h0vA 338 8.86e-05 1y3tA 337 1.04e-04 b.82.1.5 122600 2d40A 354 6.65e-04 b.82.1.23 146454 2vqaA 361 7.02e-04 3h7jA 243 7.46e-04 3cewA 125 8.39e-04 2et1A 201 8.99e-04 b.82.1.2 132351 1fi2A 201 9.88e-04 1fi2A b.82.1.2 59845 2q30A 110 1.09e-03 3h8uA 125 1.17e-03 3l2hA 162 1.43e-03 2p17A 277 3.12e-03 1sfnA 246 3.42e-03 b.82.1.11 105496 1v70A 105 5.44e-03 b.82.1.9 113555 2o8qA 134 6.01e-03 3i7dA 163 8.55e-03 2phdA 368 1.18e-02 b.82.1.23 149468 3d82A 102 1.45e-02 1yfuA 174 1.57e-02 b.82.1.20 123094 3lwcA 119 1.68e-02 3fjsA 114 2.66e-02 3ibmA 167 3.48e-02 2fqpA 97 3.67e-02 3es1A 172 3.81e-02 1sefA 274 4.73e-02 b.82.1.11 105452 1yhfA 115 5.75e-02 b.82.1.9 123176 1vr3A 191 6.24e-02 b.82.1.6 120431 1rc6A 261 6.61e-02 b.82.1.11 97287 3kgzA 156 6.71e-02 1j1lA 290 6.78e-02 b.82.1.12 90766 2gm6A 208 7.09e-02 b.82.1.19 147130 3lagA 98 9.43e-02 2oziA 98 9.81e-02 3es4A 116 9.85e-02 3eqeA 171 1.06e-01 2pytA 133 1.09e-01 b.82.1.24 149957 2i45A 107 1.24e-01 2e9qA 459 1.25e-01 2zklA 369 1.35e-01 1zvfA 176 1.75e-01 b.82.1.20 146029 2ozjA 114 2.09e-01 1juhA 350 2.64e-01 b.82.1.5 71884 1xjaA 178 3.40e-01 b.82.4.1 115382 2d5fA 493 3.76e-01 2aacA 177 5.16e-01 2arcA b.82.4.1 28150 2arcA 164 5.44e-01 2arcA b.82.4.1 28148 1od5A 492 5.60e-01 b.82.1.2,b.82.1.2 86832,86833 3jv1A 182 5.74e-01 1y9qA 192 5.90e-01 a.35.1.8,b.82.1.15 116592,116593 2opkA 112 7.30e-01 2vecA 256 7.32e-01 1qwrA 319 7.72e-01 b.82.1.3 96491 2cavA 445 8.00e-01 1dgwA b.82.1.2,b.82.1.2 28094,28095 2bnmA 198 9.42e-01 a.35.1.3,b.82.1.10 128835,128836 3dl3A 119 1.11e+00 b.82.2.13 157762 3hqxA 111 1.25e+00 2b8mA 117 1.40e+00 b.82.1.18 128092 2j3xA 431 1.44e+00 3eo6A 106 1.69e+00 1ep0A 185 1.81e+00 1dzrA b.82.1.1 28080 3f6zB 101 2.13e+00 1vrbA 342 2.15e+00 b.82.2.11 120450 1x82A 190 2.47e+00 b.82.1.7 114955 1o5uA 101 2.59e+00 b.82.1.8 92518 1qxrA 189 3.13e+00 b.82.1.7 96552 3ie4A 107 3.18e+00 2gc1A 188 3.35e+00 b.82.1.7 134928 1wkbA 810 3.76e+00 2yu1A 451 3.90e+00 2e26A 725 4.61e+00 3a7qA 725 4.98e+00 2qnkA 286 5.48e+00 3ei3A 1158 6.37e+00 3b2mA 295 6.48e+00 3gldA 295 6.72e+00 1mt6A 280 7.21e+00 b.76.2.1,b.85.7.1 79446,79447 3gleA 295 7.58e+00 2aujD 309 8.89e+00 1vp6A 138 8.98e+00 b.82.3.2 113939 3frxA 319 1.07e+01 2gy5A 423 1.09e+01 1sixA 174 1.48e+01 b.85.4.1 98892 2cg7A 90 1.58e+01 g.27.1.1,g.27.1.1 130423,130424 2jenA 261 1.61e+01 2oa2A 148 1.61e+01 3bcwA 123 1.68e+01 3e9tA 114 1.69e+01 2khaA 130 1.72e+01 1hcz 252 1.76e+01 1hcz 1n26A 325 1.83e+01 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 3eh0A 341 1.85e+01 3e0cA 1140 1.86e+01 3iteA 562 1.86e+01 2xbnA 427 1.93e+01 2w8tA 427 1.94e+01 2jg2A 422 1.97e+01 2i24N 121 2.04e+01 2dduA 387 2.11e+01 2c0zA 216 2.18e+01 b.82.1.1 129615 1axkA 394 2.20e+01 1axkA b.29.1.2,b.29.1.11 24181,24315 1fxzA 476 2.43e+01 b.82.1.2,b.82.1.2 65059,65060 2x8uA 412 2.56e+01 1qs2A 401 2.61e+01 1qs1A d.166.1.1,d.166.1.1 42268,42269 1sjnA 170 2.63e+01 b.85.4.1 98896 1qs1A 462 2.74e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1dmhA 311 2.74e+01 1dmhA b.3.6.1 22633 2pqfA 198 2.76e+01 3kldA 384 2.86e+01 2ea7A 434 2.91e+01 3eadA 137 2.93e+01 2ux0A 143 2.95e+01 d.17.4.7 152231 3hzaA 174 3.04e+01 2vveA 254 3.04e+01 2wkdA 119 3.04e+01 2bibA 547 3.08e+01 b.109.1.1,d.157.1.8 128581,128582 1uypA 432 3.09e+01 b.29.1.19,b.67.2.3 100176,100177 1nltA 248 3.09e+01 b.4.1.1,b.4.1.1,g.54.1.1 91963,91964,91965 1lci 550 3.17e+01 1lci 2inuA 410 3.18e+01 1ci3M 249 3.21e+01 1hcz b.2.6.1,b.84.2.2 22480,28266 1dgwA 178 3.27e+01 1dgwA b.82.1.2 28090 2p4oA 306 3.36e+01 b.68.6.3 149216 2f68X 313 3.36e+01 1stmA 157 3.40e+01 1stmA b.121.7.1 23281 1h3iA 293 3.49e+01 b.76.2.1,b.85.7.1 76635,76636 1s99A 200 3.62e+01 d.58.48.2 112046 2v72A 143 3.67e+01 1zrrA 179 3.73e+01 b.82.1.6 125555 2vpvA 166 3.99e+01 1rvxA 327 4.06e+01 b.19.1.2 97937 3cbtA 237 4.18e+01 3exmA 237 4.18e+01 1ajkA 214 4.38e+01 1axkA b.29.1.2 24176 3c3vA 510 4.38e+01 1e5rA 290 4.39e+01 1e5rA b.82.2.4 59276 1w4sA 174 4.45e+01 1reqB 637 4.49e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 3km3A 206 4.50e+01 3ffjA 666 4.58e+01 3kg0A 128 4.77e+01 1w2tA 432 4.80e+01 b.29.1.19,b.67.2.3 120607,120608 2hkdA 320 4.81e+01 1hocA 272 4.86e+01 1agdA b.1.1.2,d.19.1.1 20815,38297 1oi6A 205 4.88e+01 b.82.1.1 103940 2ckkA 127 5.02e+01 1p35A 299 5.09e+01 1p35A b.28.1.1 23925 2r76A 152 5.24e+01 1nr0A 611 5.36e+01 b.69.4.1,b.69.4.1 86078,86079 1dueA 242 5.47e+01 b.47.1.1 76140 1agjA 242 5.53e+01 1agjA b.47.1.1 25827 1xruA 282 5.64e+01 b.82.1.13 122262 1mq7A 154 5.68e+01 b.85.4.1 79404 2as9A 210 5.68e+01 2r0hA 164 5.79e+01 1ep3B 262 5.79e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1s7hA 200 5.81e+01 d.58.48.2 105349 2arpA 116 5.96e+01 g.17.1.2 127217 1j1tA 233 6.11e+01 b.29.1.18 90771 1hfuA 503 6.15e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2gu9A 113 6.21e+01 1ne6A 283 6.23e+01 b.82.3.2,b.82.3.2 91831,91832 2p4eA 692 6.29e+01 3gneA 252 6.34e+01 1utcA 363 6.36e+01 a.118.1.4,b.69.6.1 99914,99915 1cauA 181 6.38e+01 1dgwA b.82.1.2 28102 1c5eA 95 6.41e+01 1c5eA b.85.2.1 28317 2x7lA 231 6.44e+01 1d2eA 397 6.60e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1cnuA 137 6.69e+01 1cof d.109.1.2 40862 2eceA 462 6.72e+01 3hhyA 280 6.72e+01 3cfuA 159 6.75e+01 1pmjX 185 6.77e+01 b.18.1.18 104194 2k8qA 134 6.78e+01 3kl9A 355 6.80e+01 1k0hA 117 6.84e+01 b.106.1.2 71975 3lvmA 423 7.02e+01 1fnf 368 7.14e+01 1fnf 3holA 509 7.14e+01 2w87A 139 7.30e+01 2xcyA 386 7.30e+01 2gefA 217 7.38e+01 2fauA 341 7.39e+01 3frnA 278 7.54e+01 1ii7A 333 7.58e+01 1ii7A d.159.1.4 62415 2prdA 174 7.68e+01 b.40.5.1 25435 1h6yA 170 7.68e+01 b.18.1.7 70904 1pg6A 243 7.70e+01 b.82.5.2 94673 1txkA 498 7.72e+01 b.1.18.2,b.30.5.9 107425,107426 1p3wA 404 7.82e+01 c.67.1.3 87752 3k3oA 371 7.84e+01 2wwuA 371 7.92e+01