# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2q1zB 195 2.03e-17 1vj2A 126 5.14e-11 b.82.1.10 100796 2f4pA 147 3.93e-10 b.82.1.9 132933 3ebrA 159 7.31e-10 3cjxA 165 2.99e-09 2pfwA 116 5.60e-09 3ht1A 145 1.09e-08 2o1qA 145 1.13e-08 b.82.1.21 148547 1o4tA 133 1.74e-08 b.82.1.9 86622 1tq5A 242 2.02e-08 b.82.1.12 119311 1j58A 385 4.47e-07 b.82.1.2 71531 2qdrA 303 9.26e-07 3h8uA 125 1.01e-06 3d82A 102 1.52e-06 3h7jA 243 1.71e-06 2q30A 110 1.88e-06 3cewA 125 1.56e-05 1v70A 105 1.73e-05 b.82.1.9 113555 2vqaA 361 2.37e-05 1y3tA 337 3.78e-05 b.82.1.5 122600 1sfnA 246 4.38e-05 b.82.1.11 105496 1lr5A 163 6.92e-05 b.82.1.2 74215 2et1A 201 7.56e-05 b.82.1.2 132351 1fi2A 201 8.33e-05 1fi2A b.82.1.2 59845 2h0vA 338 8.39e-05 3l2hA 162 1.03e-04 3fjsA 114 1.81e-04 3i7dA 163 2.21e-04 3eqeA 171 4.70e-04 3lwcA 119 5.00e-04 1rc6A 261 7.56e-04 b.82.1.11 97287 1yhfA 115 9.72e-04 b.82.1.9 123176 1sefA 274 9.74e-04 b.82.1.11 105452 3es1A 172 1.09e-03 2i45A 107 1.12e-03 2p17A 277 1.21e-03 2gm6A 208 1.41e-03 b.82.1.19 147130 1yfuA 174 1.96e-03 b.82.1.20 123094 3es4A 116 1.98e-03 2d40A 354 2.30e-03 b.82.1.23 146454 2o8qA 134 2.45e-03 2pytA 133 7.98e-03 b.82.1.24 149957 3kgzA 156 1.19e-02 2bnmA 198 1.81e-02 a.35.1.3,b.82.1.10 128835,128836 2ozjA 114 4.66e-02 2phdA 368 4.66e-02 b.82.1.23 149468 2opkA 112 4.94e-02 1vr3A 191 7.15e-02 b.82.1.6 120431 2e9qA 459 9.61e-02 1zvfA 176 9.78e-02 b.82.1.20 146029 2fqpA 97 1.10e-01 2zklA 369 1.55e-01 3jv1A 182 2.45e-01 1xjaA 178 2.48e-01 b.82.4.1 115382 1o5uA 101 2.57e-01 b.82.1.8 92518 2oziA 98 2.92e-01 3lagA 98 3.98e-01 1j1lA 290 4.28e-01 b.82.1.12 90766 2aacA 177 5.54e-01 2arcA b.82.4.1 28150 3fpxA 499 6.84e-01 2arcA 164 7.40e-01 2arcA b.82.4.1 28148 3ibmA 167 8.39e-01 3eo6A 106 1.10e+00 1vp6A 138 1.28e+00 b.82.3.2 113939 2b8mA 117 1.78e+00 b.82.1.18 128092 2e26A 725 2.02e+00 2vecA 256 2.20e+00 1x9bA 53 3.03e+00 a.10.2.1 114982 1pg6A 243 3.11e+00 b.82.5.2 94673 3a7qA 725 3.15e+00 3divA 499 3.18e+00 1dxeA 256 3.48e+00 1dxeA c.1.12.5 29310 2jenA 261 3.51e+00 3bcwA 123 3.68e+00 3iteA 562 3.95e+00 1o1xA 155 4.10e+00 c.121.1.1 86553 1x82A 190 4.23e+00 b.82.1.7 114955 2cavA 445 5.11e+00 1dgwA b.82.1.2,b.82.1.2 28094,28095 2oa2A 148 5.15e+00 3kl9A 355 5.28e+00 1stmA 157 5.48e+00 1stmA b.121.7.1 23281 3dl3A 119 5.93e+00 b.82.2.13 157762 1ksyA 154 6.33e+00 d.89.1.2 72948 1h3iA 293 6.81e+00 b.76.2.1,b.85.7.1 76635,76636 1qxrA 189 6.96e+00 b.82.1.7 96552 1e0aB 46 7.27e+00 1e0aB j.65.1.1 46357 2v5jA 287 7.28e+00 1zrrA 179 7.90e+00 b.82.1.6 125555 1reqB 637 8.07e+00 1reqB c.1.19.1,c.23.6.1 29621,31248 1qwrA 319 8.21e+00 b.82.1.3 96491 1f08A 148 8.34e+00 1f08A d.89.1.2 59564 1od5A 492 8.58e+00 b.82.1.2,b.82.1.2 86832,86833 2gc1A 188 8.75e+00 b.82.1.7 134928 2arpA 116 9.40e+00 g.17.1.2 127217 1we0A 187 1.05e+01 c.47.1.10 120930 2h5uA 499 1.05e+01 1vddA 228 1.05e+01 e.49.1.1 108519 2pqmA 343 1.13e+01 1ju2A 536 1.14e+01 c.3.1.2,d.16.1.1 77169,77170 3h9xA 125 1.14e+01 2j9oA 298 1.24e+01 1mt6A 280 1.31e+01 b.76.2.1,b.85.7.1 79446,79447 2nysA 176 1.42e+01 b.136.1.2 148518 3gdpA 521 1.42e+01 2pqfA 198 1.44e+01 2i24N 121 1.45e+01 2qr6A 393 1.46e+01 2gu9A 113 1.46e+01 1lfaA 187 1.49e+01 1ido c.62.1.1 34122 2j7vA 298 1.53e+01 1g94A 448 1.53e+01 b.71.1.1,c.1.8.1 65169,65170 1u9jA 358 1.67e+01 c.2.1.2 113243 1euzA 419 1.69e+01 1k89 c.2.1.7,c.58.1.1 59513,59514 1mjnA 179 1.78e+01 c.62.1.1 79210 3hjuA 342 1.78e+01 1ibcB 88 1.80e+01 1pauB 1ev7A 317 1.88e+01 1ev7B c.52.1.9 33315 1z7bA 358 1.90e+01 c.2.1.2 124599 3eu9A 240 1.91e+01 3jw8A 320 1.91e+01 1l8rA 101 1.97e+01 a.6.1.4 73700 2ihyA 279 2.00e+01 1sc3B 88 2.11e+01 3d6fB 89 2.15e+01 3d6mB 89 2.18e+01 2h14A 317 2.34e+01 1vrbA 342 2.36e+01 b.82.2.11 120450 1eesB 46 2.39e+01 1eesB j.65.1.1 46356 2pn0A 141 2.41e+01 3kg0A 128 2.42e+01 2wgoA 98 2.46e+01 3k50A 403 2.47e+01 1r3eA 309 2.48e+01 b.122.1.1,d.265.1.2 96907,96908 1x0hA 112 2.54e+01 d.332.1.1 121547 2d5fA 493 2.56e+01 1dgwA 178 2.58e+01 1dgwA b.82.1.2 28090 2gnqA 336 2.60e+01 3kc6A 204 2.63e+01 1q01A 38 2.64e+01 1rl3A 288 2.69e+01 b.82.3.2,b.82.3.2 104975,104976 2gzaA 361 2.72e+01 2c4nA 250 2.78e+01 c.108.1.14 129837 1frvA 264 2.83e+01 2frvA e.19.1.1 43308 1wdvA 152 2.84e+01 d.116.1.1 114539 3hd0A 237 2.86e+01 3liuA 402 2.87e+01 1znpA 154 2.87e+01 b.82.1.16 125394 2qnkA 286 2.92e+01 1dueA 242 3.03e+01 b.47.1.1 76140 3emhA 318 3.16e+01 3hqxA 111 3.17e+01 1cnuA 137 3.21e+01 1cof d.109.1.2 40862 2bllA 345 3.21e+01 c.2.1.2 128733 1f3mA 80 3.25e+01 1f3mA j.66.1.1 46358 1ne6A 283 3.44e+01 b.82.3.2,b.82.3.2 91831,91832 3l56A 222 3.49e+01 2inuA 410 3.52e+01 2dscA 212 3.63e+01 1agjA 242 3.65e+01 1agjA b.47.1.1 25827 2z8lA 208 3.68e+01 b.40.2.2,d.15.6.1 154209,154210 1cm7A 363 3.69e+01 1cnzA c.77.1.1 35063 3gyqA 272 3.73e+01 3gs3A 257 3.74e+01 3fzeA 196 3.77e+01 2cwrA 103 3.85e+01 1cnzA 363 3.87e+01 1cnzA c.77.1.1 35061 3kdeC 77 4.07e+01 1wm1A 317 4.09e+01 c.69.1.7 109405 1o6lA 337 4.11e+01 d.144.1.7 81092 1c3mA 147 4.13e+01 1jotA b.77.3.1 27983 1ep0A 185 4.14e+01 1dzrA b.82.1.1 28080 1qtrA 317 4.33e+01 1qtrA c.69.1.7 34660 3l51A 161 4.34e+01 2ej9A 237 4.35e+01 1j6uA 469 4.35e+01 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1ipaA 274 4.40e+01 c.116.1.1,d.79.3.3 71254,71255 3ckjA 329 4.40e+01 2qt5A 200 4.41e+01 1ni5A 433 4.41e+01 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1o97D 320 4.51e+01 c.26.2.3,c.31.1.2 81233,81234 2r47A 157 4.79e+01 1cauA 181 4.85e+01 1dgwA b.82.1.2 28102 1bssA 244 4.91e+01 1rvaA c.52.1.2 33256 2z0tA 109 4.95e+01 3mghA 329 5.05e+01 2glfA 450 5.13e+01 1zuoA 186 5.20e+01 d.20.1.1 125680 2nxcA 254 5.21e+01 c.66.1.39 138739 1y9qA 192 5.22e+01 a.35.1.8,b.82.1.15 116592,116593 3cwqA 209 5.22e+01 3ju2A 284 5.22e+01 1khyA 148 5.23e+01 a.174.1.1 77410 2jl1A 287 5.43e+01 3djaA 579 5.46e+01 1vjrA 271 5.58e+01 c.108.1.14 100832 1rgs 288 5.58e+01 1rgs 1fxzA 476 5.67e+01 b.82.1.2,b.82.1.2 65059,65060 3khwA 204 5.67e+01 1qndA 123 5.69e+01 1qndA d.106.1.1 40794 3c3jA 384 5.72e+01 3psgA 370 5.74e+01 b.50.1.2 26841 1m0uA 249 5.76e+01 a.45.1.1,c.47.1.5 78359,78360 2fexA 188 5.76e+01 c.23.16.2 133354 2yy8A 201 5.82e+01 2a19B 284 5.85e+01 3dorA 583 5.94e+01 2p0oA 372 5.96e+01 1sx5A 244 5.97e+01 c.52.1.2 99023 2r6hA 290 5.99e+01 3bkzA 201 6.03e+01 2o0mA 345 6.07e+01 c.124.1.8 148543 2cxkA 95 6.08e+01 b.1.18.1 131006 2evbA 74 6.12e+01 1z3sA 217 6.13e+01 3llwA 311 6.24e+01 2w36A 225 6.36e+01 1c44A 123 6.38e+01 1qndA d.106.1.1 40795 1prs 173 6.45e+01 1prs 2b99A 156 6.45e+01 2khaA 130 6.47e+01 3crvA 551 6.51e+01 3hy3A 203 6.62e+01 3ie4A 107 6.87e+01 3c3vA 510 6.90e+01 1c5eA 95 6.94e+01 1c5eA b.85.2.1 28317 2fdiA 211 7.04e+01 b.82.2.10 133311 1q67A 231 7.20e+01 b.55.1.7 95960 2wb9A 211 7.29e+01 2qjvA 270 7.32e+01 2kctA 94 7.53e+01 1nubA 229 7.62e+01 1sra a.39.1.3,g.3.11.3,g.68.1.1 17191,44330,44715 1o4rA 108 7.67e+01 d.93.1.1 92469 2b1kA 168 7.75e+01 1b97A 244 7.78e+01 1rvaA c.52.1.2 33252 3f3bA 126 7.81e+01 1fvpA 231 7.82e+01 1nfp c.1.16.2 29556 1jt8A 102 7.86e+01 b.40.4.5 63279 1k3sA 113 7.88e+01 d.198.1.1 68120