# List of top-scoring protein chains for T0582.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sq4A 278 2.44e-22 b.82.1.11 98962 1j58A 385 2.75e-22 b.82.1.2 71531 2v09A 385 3.14e-22 2uy8A 385 3.71e-22 2uybA 385 4.45e-22 2uy9A 385 5.97e-22 2uyaA 383 1.63e-21 1tq5A 242 2.06e-20 b.82.1.12 119311 1j1lA 290 1.33e-16 b.82.1.12 90766 2vqaA 361 6.65e-16 2qdrA 303 6.90e-14 2p17A 277 9.66e-14 1sefA 274 5.61e-12 b.82.1.11 105452 1vj2A 126 8.21e-12 b.82.1.10 100796 3ht1A 145 2.88e-11 2pfwA 116 4.49e-11 1rc6A 261 8.91e-11 b.82.1.11 97287 1sfnA 246 3.46e-10 b.82.1.11 105496 2z2sB 203 6.82e-10 3h7jA 243 9.52e-10 2q1zB 195 1.11e-09 1o4tA 133 1.40e-09 b.82.1.9 86622 3cjxA 165 2.62e-09 2et7A 201 7.12e-09 b.82.1.2 132352 2eteA 201 7.73e-09 b.82.1.2 132354 2et1A 201 7.76e-09 b.82.1.2 132351 1y3tA 337 1.37e-08 b.82.1.5 122600 2h0vA 338 1.40e-08 3i7dA 163 1.43e-08 3l2hA 162 3.07e-08 2f4pA 147 3.88e-08 b.82.1.9 132933 2o8qA 134 2.05e-07 3ibmA 167 5.16e-07 2vecA 256 9.13e-07 3h8uA 125 9.72e-07 3ebrA 159 2.25e-06 1lr5A 163 2.96e-06 b.82.1.2 74215 2q30A 110 4.55e-06 3kgzA 156 5.55e-06 3d82A 102 8.11e-06 1yhfA 115 8.55e-06 b.82.1.9 123176 1v70A 105 1.13e-05 b.82.1.9 113555 1uijA 416 1.22e-05 b.82.1.2,b.82.1.2 107866,107867 1yfuA 174 2.06e-05 b.82.1.20 123094 3balA 153 2.64e-05 1ipkA 416 2.92e-05 b.82.1.2,b.82.1.2 71264,71265 3bu7A 394 2.92e-05 b.82.1.23 155593 1ipjA 416 3.34e-05 b.82.1.2,b.82.1.2 71258,71259 3jzvA 166 3.43e-05 2d40A 354 4.62e-05 b.82.1.23 146454 3cewA 125 4.79e-05 1uikA 418 6.39e-05 b.82.1.2,b.82.1.2 107878,107879 1juhA 350 8.92e-05 b.82.1.5 71884 2fqpA 97 1.63e-04 1vr3A 191 1.72e-04 b.82.1.6 120431 3lagA 98 1.82e-04 1zvfA 176 2.18e-04 b.82.1.20 146029 2o1qA 145 2.74e-04 b.82.1.21 148547 2d5fA 493 7.05e-04 1od5A 492 7.05e-04 b.82.1.2,b.82.1.2 86832,86833 2pytA 133 8.53e-04 b.82.1.24 149957 2opkA 112 9.47e-04 3h50A 114 1.04e-03 2gu9A 113 1.04e-03 2phdA 368 1.14e-03 b.82.1.23 149468 3fe5A 285 1.18e-03 3lwcA 119 1.43e-03 3es1A 172 1.62e-03 2cavA 445 2.03e-03 1dgwA b.82.1.2,b.82.1.2 28094,28095 2i45A 107 2.64e-03 3eqeA 171 3.09e-03 2gc1A 188 3.30e-03 b.82.1.7 134928 1qxrA 189 3.33e-03 b.82.1.7 96552 1x82A 190 3.33e-03 b.82.1.7 114955 2ea7A 434 3.87e-03 2oa2A 148 3.88e-03 2eaaA 433 3.96e-03 1fxzA 476 5.01e-03 b.82.1.2,b.82.1.2 65059,65060 1ucxA 476 5.11e-03 b.82.1.2,b.82.1.2 99192,99193 2e9qA 459 5.48e-03 2b8mA 117 5.87e-03 b.82.1.18 128092 1ud1A 476 6.23e-03 b.82.1.2,b.82.1.2 99202,99203 1j3qA 190 1.01e-02 b.82.1.7 90821 2cv6A 424 1.10e-02 1qwrA 319 1.28e-02 b.82.1.3 96491 3fjsA 114 1.35e-02 3fz3A 531 1.45e-02 2q4sA 200 1.59e-02 b.82.1.19 139877 3elnA 200 1.60e-02 b.82.1.19 158185 2ic1A 205 2.17e-02 b.82.1.19 147600 3es4A 116 2.93e-02 2gm6A 208 3.79e-02 b.82.1.19 147130 2ozjA 114 5.90e-02 2b9uA 176 1.33e-01 2qnkA 286 1.39e-01 1wltA 196 1.50e-01 b.82.1.1 121013 3eo6A 106 1.69e-01 1lknA 89 1.84e-01 b.82.1.8 84624 1vrbA 342 1.85e-01 b.82.2.11 120450 1xjaA 178 2.01e-01 b.82.4.1 115382 2arcA 164 2.03e-01 2arcA b.82.4.1 28148 2aacA 177 2.07e-01 2arcA b.82.4.1 28150 2araA 149 2.08e-01 b.82.4.1 28152 3kscA 496 2.60e-01 1o5uA 101 3.05e-01 b.82.1.8 92518 1cauA 181 3.11e-01 1dgwA b.82.1.2 28102 1dgwA 178 3.26e-01 1dgwA b.82.1.2 28090 1y9qA 192 5.09e-01 a.35.1.8,b.82.1.15 116592,116593 3bcwA 123 6.75e-01 3kglA 466 7.25e-01 2bnmA 198 9.72e-01 a.35.1.3,b.82.1.10 128835,128836 2yu1A 451 1.12e+00 2pa7A 141 1.75e+00 b.82.1.1 149339 2c2bA 486 1.87e+00 1e5xA 486 1.97e+00 c.79.1.1 59283 1cauB 184 2.17e+00 1caxB b.82.1.2 28103 3h1wA 393 2.25e+00 2wfpA 394 2.25e+00 2ka9A 189 2.36e+00 3hqxA 111 2.41e+00 3c3vA 510 2.55e+00 1e5rA 290 2.67e+00 1e5rA b.82.2.4 59276 2vz8A 2512 2.71e+00 2phlA 397 4.26e+00 1dgwA b.82.1.2,b.82.1.2 28082,28083 1hcuA 503 6.49e+00 a.102.2.1 65796 3gcfA 394 6.52e+00 3h7cX 383 6.52e+00 2q3uA 383 6.52e+00 d.126.1.6 139809 1zsvA 349 6.53e+00 3h7kA 383 7.26e+00 3lx6A 410 1.14e+01 1h0cA 392 1.14e+01 c.67.1.3 83424 3me5A 482 1.15e+01 3dl3A 119 1.16e+01 b.82.2.13 157762 2bygA 117 1.17e+01 b.36.1.1 129480 2wmhA 581 1.24e+01 2q2gA 180 1.25e+01 2wmfA 581 1.29e+01 1c3rA 375 1.38e+01 1c3pA c.42.1.2 32607 1j04A 392 1.48e+01 c.67.1.3 90734 1c3pA 375 1.50e+01 1c3pA c.42.1.2 32606 1tt4A 396 1.51e+01 d.128.1.3 107289 1vj0A 380 1.54e+01 b.35.1.2,c.2.1.1 100786,100787 3co2A 140 1.64e+01 1zrrA 179 1.71e+01 b.82.1.6 125555 3behA 355 1.78e+01 1bw0A 416 1.97e+01 1bw0A c.67.1.1 34385 1wy2A 351 2.00e+01 2awxA 105 2.00e+01 1pv9A 348 2.15e+01 c.55.2.1,d.127.1.1 95157,95158 2awuA 105 2.25e+01 2v3xA 440 2.27e+01 c.55.2.1,d.127.1.1 152477,152478 1qlcA 95 2.34e+01 1qauA b.36.1.1 24776 1jawA 440 2.43e+01 c.55.2.1,d.127.1.1 33549,41166 1wl9A 440 2.43e+01 c.55.2.1,d.127.1.1 120998,120999 1op3H 225 2.44e+01 b.1.1.1,b.1.1.2 87208,87209 2dm6A 333 2.46e+01 b.35.1.2,c.2.1.1 131567,131568 1zlsH 224 2.46e+01 b.1.1.1,b.1.1.2 125255,125256 1yrrA 382 2.49e+01 b.92.1.5,c.1.9.10 123935,123936 2dnfA 108 2.51e+01 1l9xA 315 2.52e+01 c.23.16.1 73762 2v3zA 440 2.53e+01 c.55.2.1,d.127.1.1 152481,152482 3h55A 400 2.58e+01 3e5zA 296 2.61e+01 3jzlA 409 2.68e+01 2fe5A 94 2.69e+01 b.36.1.1 133323 1cs1A 386 2.70e+01 1ibjA c.67.1.3 34399 3d37A 381 2.76e+01 b.106.1.1,b.106.1.1 157269,157270 2k0gA 142 2.85e+01 2ux8A 297 2.91e+01 2fp4A 305 2.93e+01 c.2.1.8,c.23.4.1 133895,133896 1mg2A 390 2.94e+01 b.69.2.1 79059 1eudA 311 2.94e+01 2scuA c.2.1.8,c.23.4.1 30312,31140 3cl1A 140 2.96e+01 b.82.3.2 156750 2pakA 141 2.99e+01 b.82.1.1 149346 2dbnA 461 2.99e+01 2z00A 426 3.02e+01 3clpA 140 3.04e+01 3i44A 497 3.06e+01 2g2lA 105 3.07e+01 2v3yA 440 3.11e+01 c.55.2.1,d.127.1.1 152479,152480 1vp6A 138 3.13e+01 b.82.3.2 113939 1u12A 138 3.13e+01 b.82.3.2 112946 3dlmA 213 3.13e+01 2vobA 652 3.13e+01 2vpmA 653 3.14e+01 2zklA 369 3.15e+01 2paeA 141 3.23e+01 b.82.1.1 149341 2bwtA 440 3.25e+01 c.55.2.1,d.127.1.1 129383,129384 3dkqA 243 3.37e+01 2wmgA 581 3.50e+01 2oqsA 97 3.60e+01 2dxuA 235 3.61e+01 2x7zA 99 3.77e+01 3jq0A 493 3.81e+01 1ep0A 185 3.87e+01 1dzrA b.82.1.1 28080 1hyqA 263 3.89e+01 1hyqA c.37.1.10 61412 2i0lA 84 4.02e+01 2awwA 105 4.20e+01 1zx5A 300 4.22e+01 b.82.1.3 125763 2bwwA 440 4.46e+01 c.55.2.1,d.127.1.1 129389,129390 1orrA 347 4.55e+01 c.2.1.2 93460 3b76A 118 4.57e+01 2waqA 880 4.60e+01 3emrA 310 4.60e+01 2bwuA 440 4.70e+01 c.55.2.1,d.127.1.1 129385,129386 2zgwA 235 4.71e+01 b.34.1.1,d.104.1.2 154421,154422 1kk3A 410 4.81e+01 b.43.3.1,b.44.1.1,c.37.1.8 72640,72641,72642 2bwxA 441 4.84e+01 c.55.2.1,d.127.1.1 129391,129392 2ew1A 201 4.95e+01 c.37.1.8 132446 1kk1A 410 4.96e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 2mtaH 373 4.99e+01 2bbkH b.69.2.1 27636 1q4uA 151 5.06e+01 d.38.1.5 95828 2gc7A 386 5.10e+01 b.69.2.1 134954 3khsA 285 5.23e+01 2vpvA 166 5.28e+01 2dr1A 386 5.56e+01 1cneA 270 5.59e+01 b.43.4.2,c.25.1.1 25661,31551 3hkzA 880 5.60e+01 3ib0A 345 5.73e+01 2aysA 348 5.73e+01 c.94.1.2 127570 2p1sA 344 5.75e+01 c.94.1.2 139458 1kyhA 276 5.75e+01 c.72.1.4 73222 2bbkH 355 5.82e+01 2bbkH b.69.2.1 27634 1sdxA 335 5.95e+01 c.94.1.2 98812 1eqkA 102 6.03e+01 1eqkA d.17.1.2 37998 3k3oA 371 6.21e+01 2cndA 270 6.22e+01 b.43.4.2,c.25.1.1 25659,31549 3k4iA 244 6.24e+01 3g9dA 297 6.29e+01 1fs0E 138 6.36e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1mzzA 334 6.54e+01 b.6.1.3,b.6.1.3 103850,103851 2wr8A 259 6.65e+01 2zt9C 289 6.66e+01 1p50A 356 6.70e+01 a.83.1.1,d.128.1.2 87786,87787 2g6vA 402 6.80e+01 1jpeA 151 6.93e+01 b.1.17.1 77146 3cvwA 543 6.95e+01 2wwuA 371 7.05e+01 3epf1 278 7.05e+01 3eghC 170 7.05e+01 1l6oA 95 7.08e+01 b.36.1.1 84534 1eah1 301 7.19e+01 1pov1 1aqtA 138 7.21e+01 a.2.10.1,b.93.1.1 15718,28435 1nexB 464 7.25e+01 a.158.1.1,b.69.4.1 80443,80444 3fy5A 91 7.29e+01 1vqoA 240 7.30e+01 b.34.5.3,b.40.4.5 120361,120362 3eggC 170 7.33e+01 3g6eA 237 7.33e+01 2otlA 239 7.33e+01 b.34.5.3,b.40.4.5 139345,139346 1an9A 340 7.36e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 2ixkA 184 7.39e+01 2ixhA 184 7.41e+01 b.82.1.1 137769 3bx3A 335 7.43e+01 1xxxA 303 7.46e+01 c.1.10.1 122433 1bg0A 356 7.48e+01 a.83.1.1,d.128.1.2 18476,41211 1wu8A 256 7.49e+01 1m15A 357 7.49e+01 a.83.1.1,d.128.1.2 78368,78369 2f0aA 98 7.55e+01 b.36.1.1 132661 1u2cA 246 7.65e+01 b.1.6.2,d.272.1.1 107610,107611 1gjyA 167 7.66e+01 a.39.1.8 70199 2csgA 424 7.70e+01 b.82.2.12 130768 1rl9A 357 7.73e+01 a.83.1.1,d.128.1.2 104979,104980 1z7z1 286 7.76e+01 3eo5A 171 7.82e+01 2p53A 382 7.95e+01 b.92.1.5,c.1.9.10 149231,149232