# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tq5A 242 3.49e-21 b.82.1.12 119311 1j58A 385 8.63e-21 b.82.1.2 71531 1j1lA 290 1.00e-17 b.82.1.12 90766 2vqaA 361 3.72e-17 2p17A 277 4.37e-16 2qdrA 303 7.84e-16 1sefA 274 1.90e-15 b.82.1.11 105452 1rc6A 261 1.60e-13 b.82.1.11 97287 1sfnA 246 3.12e-13 b.82.1.11 105496 1vj2A 126 3.50e-13 b.82.1.10 100796 2pfwA 116 1.20e-12 3ht1A 145 1.74e-12 1o4tA 133 5.27e-12 b.82.1.9 86622 2q1zB 195 1.61e-11 3h7jA 243 1.70e-11 2h0vA 338 1.25e-10 3cjxA 165 1.60e-10 2vecA 256 1.70e-10 1y3tA 337 1.71e-10 b.82.1.5 122600 1fi2A 201 2.32e-10 1fi2A b.82.1.2 59845 2et1A 201 2.58e-10 b.82.1.2 132351 2f4pA 147 3.77e-10 b.82.1.9 132933 3i7dA 163 5.41e-10 3l2hA 162 5.51e-10 2o8qA 134 2.60e-09 3h8uA 125 4.95e-09 3ibmA 167 9.21e-09 3ebrA 159 1.09e-08 1lr5A 163 1.31e-08 b.82.1.2 74215 3d82A 102 2.44e-08 1v70A 105 3.07e-08 b.82.1.9 113555 3kgzA 156 6.61e-08 2q30A 110 7.47e-08 1yhfA 115 1.40e-07 b.82.1.9 123176 3cewA 125 2.16e-07 2d40A 354 6.06e-07 b.82.1.23 146454 1yfuA 174 1.12e-06 b.82.1.20 123094 3lwcA 119 1.25e-06 2pytA 133 1.41e-06 b.82.1.24 149957 1juhA 350 2.14e-06 b.82.1.5 71884 2gu9A 113 2.47e-06 2opkA 112 2.65e-06 2ea7A 434 2.70e-06 2fqpA 97 2.73e-06 2phdA 368 3.70e-06 b.82.1.23 149468 3fz3A 531 4.95e-06 2o1qA 145 5.95e-06 b.82.1.21 148547 3lagA 98 9.24e-06 2i45A 107 1.03e-05 3eqeA 171 1.04e-05 2oziA 98 1.14e-05 2oa2A 148 1.17e-05 3fjsA 114 1.29e-05 1zvfA 176 1.38e-05 b.82.1.20 146029 1vr3A 191 2.02e-05 b.82.1.6 120431 1od5A 492 2.84e-05 b.82.1.2,b.82.1.2 86832,86833 2d5fA 493 4.27e-05 2b8mA 117 4.45e-05 b.82.1.18 128092 3elnA 200 5.85e-05 b.82.1.19 158185 2b5hA 200 6.27e-05 b.82.1.19 127894 3es1A 172 6.36e-05 2gc1A 188 6.46e-05 b.82.1.7 134928 2atfA 200 7.75e-05 b.82.1.19 127290 3es4A 116 7.91e-05 1x82A 190 8.05e-05 b.82.1.7 114955 1qxrA 189 1.01e-04 b.82.1.7 96552 2phlA 397 1.03e-04 1dgwA b.82.1.2,b.82.1.2 28082,28083 2e9qA 459 1.34e-04 2ozjA 114 1.43e-04 2gm6A 208 3.75e-04 b.82.1.19 147130 1qwrA 319 4.87e-04 b.82.1.3 96491 2bnmA 198 5.35e-04 a.35.1.3,b.82.1.10 128835,128836 2qnkA 286 5.43e-04 1vrbA 342 1.02e-03 b.82.2.11 120450 3eo6A 106 1.13e-03 1dgwA 178 1.41e-03 1dgwA b.82.1.2 28090 1y9qA 192 2.63e-03 a.35.1.8,b.82.1.15 116592,116593 1xjaA 178 4.07e-03 b.82.4.1 115382 2arcA 164 6.53e-03 2arcA b.82.4.1 28148 3c3vA 510 6.61e-03 1o5uA 101 9.85e-03 b.82.1.8 92518 3hqxA 111 1.21e-02 2pa7A 141 1.22e-02 b.82.1.1 149339 2zklA 369 2.31e-02 3bcwA 123 4.61e-02 2b9uA 176 1.29e-01 1cauB 184 1.77e-01 1caxB b.82.1.2 28103 2vpvA 166 2.24e-01 3dl3A 119 2.86e-01 b.82.2.13 157762 1vp6A 138 3.18e-01 b.82.3.2 113939 1zrrA 179 3.24e-01 b.82.1.6 125555 1e5rA 290 4.12e-01 1e5rA b.82.2.4 59276 1zx5A 300 7.04e-01 b.82.1.3 125763 2ixkA 184 8.02e-01 2wfpA 394 8.27e-01 3h1wA 393 9.10e-01 3dkqA 243 1.11e+00 2yu1A 451 1.35e+00 3bb6A 127 1.36e+00 b.82.2.13 155045 2pamA 141 1.58e+00 b.82.1.1 149348 2dr1A 386 2.01e+00 1wgpA 137 2.08e+00 b.82.3.2 114619 3g7dA 443 2.11e+00 2zgwA 235 2.48e+00 b.34.1.1,d.104.1.2 154421,154422 3cswA 285 2.86e+00 1ep0A 185 2.87e+00 1dzrA b.82.1.1 28080 1wqwA 235 3.40e+00 b.34.1.1,d.104.1.2 121179,121180 2dxuA 235 3.40e+00 2wr8A 259 3.65e+00 3g7gA 158 3.76e+00 1nltA 248 4.13e+00 b.4.1.1,b.4.1.1,g.54.1.1 91963,91964,91965 1vj0A 380 4.21e+00 b.35.1.2,c.2.1.1 100786,100787 1pg6A 243 4.52e+00 b.82.5.2 94673 2cw8A 537 5.45e+00 1frdA 98 6.43e+00 d.15.4.1 37648 2awxA 105 6.55e+00 1doiA 128 6.58e+00 d.15.4.1 37676 1ne6A 283 6.59e+00 b.82.3.2,b.82.3.2 91831,91832 1g6gA 127 7.15e+00 1g6gA b.26.1.2 23916 2a1xA 308 7.26e+00 b.82.2.9 126022 1z77A 200 7.65e+00 a.4.1.9,a.121.1.1 124588,124589 2iekA 200 8.06e+00 a.4.1.9,a.121.1.1 147647,147648 3d0jA 140 8.19e+00 2dm6A 333 8.38e+00 b.35.1.2,c.2.1.1 131567,131568 2fmyA 220 8.47e+00 1ru7A 327 8.73e+00 b.19.1.2 97837 2rg4A 216 9.50e+00 2dbnA 461 9.74e+00 1yllA 200 9.76e+00 b.82.1.17 123653 1e10A 128 1.00e+01 1awd d.15.4.1 59154 2id6A 202 1.01e+01 a.4.1.9,a.121.1.1 147624,147625 2fe5A 94 1.01e+01 b.36.1.1 133323 1zkgA 212 1.01e+01 a.4.1.9,a.121.1.1 125194,125195 1r3eA 309 1.03e+01 b.122.1.1,d.265.1.2 96907,96908 3d8cA 349 1.06e+01 1ywkA 289 1.07e+01 b.82.1.13 124155 1rvxA 327 1.08e+01 b.19.1.2 97937 3k3oA 371 1.08e+01 3h6nA 127 1.11e+01 1jniA 123 1.13e+01 a.138.1.3 71761 2oyzA 94 1.16e+01 b.82.1.22 149082 1fs0E 138 1.28e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 2cbpA 96 1.31e+01 b.6.1.1 22895 3hveA 256 1.32e+01 1xruA 282 1.32e+01 b.82.1.13 122262 1u2cA 246 1.33e+01 b.1.6.2,d.272.1.1 107610,107611 2e1hA 235 1.39e+01 2w2jA 291 1.41e+01 2kctA 94 1.47e+01 1b8fA 509 1.52e+01 1b8fA a.127.1.2 19434 1wl9A 440 1.63e+01 c.55.2.1,d.127.1.1 120998,120999 1q67A 231 1.66e+01 b.55.1.7 95960 2waqA 880 1.66e+01 3fq0A 157 1.73e+01 1fyhA 258 1.74e+01 1d9cA a.26.1.3,a.26.1.3 16907,16908 2bwvA 440 1.76e+01 c.55.2.1,d.127.1.1 129387,129388 1zhvA 134 1.81e+01 d.58.18.8,d.58.18.8 125109,125110 1yoxA 250 1.91e+01 b.82.5.2 123789 1x0hA 112 2.00e+01 d.332.1.1 121547 1p16A 395 2.05e+01 b.40.4.6,d.142.2.3 87661,87662 1h2kA 349 2.09e+01 b.82.2.6 76572 1qxpA 900 2.11e+01 a.39.1.8,a.39.1.8,b.14.1.1,d.3.1.3 96543,96544,96545,96546 2v3zA 440 2.12e+01 c.55.2.1,d.127.1.1 152481,152482 1knqA 175 2.16e+01 c.37.1.17 72786 2w9sA 161 2.19e+01 2x7zA 99 2.22e+01 1xovA 326 2.23e+01 b.34.11.4,c.56.5.6 122206,122207 3iezA 114 2.24e+01 1sgwA 214 2.35e+01 c.37.1.12 105541 2iutA 574 2.45e+01 3gyrA 612 2.61e+01 2q2gA 180 2.63e+01 3h55A 400 2.64e+01 2v73A 191 2.66e+01 2wwuA 371 2.75e+01 3gruA 295 2.82e+01 2d93A 134 2.86e+01 1rl3A 288 2.91e+01 b.82.3.2,b.82.3.2 104975,104976 1jqbA 351 3.04e+01 b.35.1.2,c.2.1.1 77151,77152 2csgA 424 3.10e+01 b.82.2.12 130768 1kv0A 66 3.12e+01 g.3.7.1 91040 3en2A 101 3.30e+01 3ljyA 243 3.30e+01 1kk1A 410 3.30e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1kevA 351 3.30e+01 1pedA b.35.1.2,c.2.1.1 24749,29765 1dpjA 329 3.31e+01 1smrA b.50.1.2 26828 1ds1A 324 3.32e+01 1drtA b.82.2.2 28127 2w9hA 159 3.45e+01 1bw0A 416 3.49e+01 1bw0A c.67.1.1 34385 1ahsA 126 3.59e+01 1ahsA b.19.1.1 23794 1bkbA 136 3.60e+01 b.34.5.2,b.40.4.5 24609,25341 1n46A 258 3.63e+01 a.123.1.1 85315 1gkmA 509 3.64e+01 a.127.1.2 70228 1bkb 136 3.64e+01 1bkb 1qtrA 317 3.67e+01 1qtrA c.69.1.7 34660 3grlA 651 3.68e+01 1nh1A 330 3.69e+01 e.45.1.1 91871 3gd7A 390 3.72e+01 2vunA 386 3.81e+01 3l4gB 589 3.85e+01 3f0uX 157 3.91e+01 1eylA 186 3.95e+01 1wba b.42.4.1 25593 1xyzA 347 3.96e+01 1taxA c.1.8.3 28804 1wlsA 328 4.01e+01 1gg4A 452 4.06e+01 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 3hdvA 136 4.13e+01 2qjvA 270 4.19e+01 1ruzH 328 4.23e+01 b.19.1.2 97889 2vcyA 344 4.41e+01 3liuA 402 4.51e+01 1wapA 75 4.53e+01 1wapA b.82.5.1 28153 1tr8A 102 4.57e+01 3ieyB 153 4.58e+01 2dt4A 143 4.63e+01 3h9xA 125 4.64e+01 1aohA 147 4.78e+01 1aohA b.2.2.2 22401 1irxA 523 4.82e+01 a.97.1.2,c.26.1.1 71378,71379 3eetA 274 4.88e+01 1iz6A 138 4.88e+01 b.34.5.2,b.40.4.5 76976,76977 2wy3B 158 4.90e+01 3fydA 263 4.93e+01 2i61A 62 5.05e+01 2r6hA 290 5.06e+01 2c7pA 327 5.10e+01 c.66.1.26 130080 1x24A 180 5.20e+01 3dlmA 213 5.30e+01 2flhA 155 5.32e+01 3ie4A 107 5.34e+01 1ldjA 760 5.35e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1oc2A 348 5.47e+01 c.2.1.2 92765 3bkzA 201 5.55e+01 1n27A 96 5.60e+01 b.34.9.2 91549 1n13B 113 5.61e+01 1wm1A 317 5.86e+01 c.69.1.7 109405 2d2eA 250 5.91e+01 3gd3A 535 5.95e+01 1cs1A 386 6.03e+01 1ibjA c.67.1.3 34399 1n91A 108 6.16e+01 d.206.1.1 80326 1iukA 140 6.27e+01 c.2.1.8 83712 2eihA 343 6.40e+01 1gxcA 149 6.47e+01 b.26.1.2 70687 1omiA 248 6.62e+01 b.82.3.3,a.4.5.4 87079,87080 3if0X 153 6.65e+01 3k2oA 336 6.72e+01 3cg6A 146 6.72e+01 1faeA 629 6.79e+01 1fce a.102.1.2 18837 1oxxK 353 6.81e+01 b.40.6.3,c.37.1.12 93715,93716 1c3pA 375 6.81e+01 1c3pA c.42.1.2 32606 1cjaA 342 6.86e+01 1cjaA d.144.1.3 41708 1w4sA 174 6.89e+01 2nysA 176 6.91e+01 b.136.1.2 148518 3hunA 453 6.92e+01 2extA 77 7.00e+01 b.82.5.1 132563 3ci0K 298 7.09e+01 a.60.16.1,a.60.16.1,d.24.1.6 156659,156660,156661 2w9vA 44 7.09e+01 6mhtA 327 7.12e+01 6mhtA c.66.1.26 34226 1g9gA 629 7.13e+01 a.102.1.2 83279 1znpA 154 7.14e+01 b.82.1.16 125394 1zo4A 473 7.15e+01 3gmfA 205 7.34e+01 3lazA 99 7.34e+01 3kx3A 470 7.35e+01 1feuA 206 7.39e+01 1feuA b.53.1.1 59801 2vouA 397 7.49e+01 c.3.1.2,d.16.1.2 153389,153390 1npsA 88 7.52e+01 1prs b.11.1.1 23622 2pmzA 880 7.53e+01 1fiqC 763 7.53e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 3lmlA 460 7.53e+01 2j01Z 206 7.54e+01 b.53.1.1 145582 1wloA 136 7.56e+01 1qu5A 182 7.58e+01 1qu5A b.26.1.2 23922 2aheA 267 7.60e+01 2a9mH 126 7.62e+01 2itmA 484 7.67e+01 1khxA 227 7.67e+01 b.26.1.1 68631 1oxsC 353 7.69e+01 b.40.6.3,c.37.1.12 87519,87520 1th8A 145 7.71e+01 d.122.1.3 106908 1hw5A 210 7.72e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 2fdiA 211 7.74e+01 b.82.2.10 133311 3kx4A 470 7.82e+01 1jpzA 473 7.85e+01 a.104.1.1 67069 3lx6A 410 7.89e+01