# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tq5A 242 2.93e-16 b.82.1.12 119311 1j58A 385 3.15e-16 b.82.1.2 71531 1j1lA 290 3.12e-14 b.82.1.12 90766 2vqaA 361 1.58e-13 2qdrA 303 1.62e-12 2p17A 277 1.01e-11 1sefA 274 7.97e-11 b.82.1.11 105452 1sfnA 246 1.95e-10 b.82.1.11 105496 1rc6A 261 7.65e-10 b.82.1.11 97287 2pfwA 116 1.35e-09 1vj2A 126 7.16e-09 b.82.1.10 100796 3ht1A 145 1.35e-08 1y3tA 337 3.08e-08 b.82.1.5 122600 2h0vA 338 4.41e-08 3cjxA 165 4.48e-08 1o4tA 133 5.04e-08 b.82.1.9 86622 2q1zB 195 5.68e-08 3h7jA 243 1.07e-07 2vecA 256 1.55e-07 1juhA 350 3.59e-07 b.82.1.5 71884 2phdA 368 4.52e-07 b.82.1.23 149468 3i7dA 163 5.37e-07 2f4pA 147 6.23e-07 b.82.1.9 132933 3ibmA 167 6.54e-07 2et1A 201 7.80e-07 b.82.1.2 132351 2d40A 354 1.03e-06 b.82.1.23 146454 1fi2A 201 1.06e-06 1fi2A b.82.1.2 59845 2o8qA 134 2.02e-06 3l2hA 162 2.25e-06 3h8uA 125 7.13e-06 3ebrA 159 8.97e-06 1lr5A 163 1.18e-05 b.82.1.2 74215 2d5fA 493 1.31e-05 1od5A 492 2.07e-05 b.82.1.2,b.82.1.2 86832,86833 2q30A 110 2.52e-05 3kgzA 156 3.24e-05 1v70A 105 5.02e-05 b.82.1.9 113555 3d82A 102 5.21e-05 2ea7A 434 6.43e-05 1yhfA 115 8.05e-05 b.82.1.9 123176 2fqpA 97 1.02e-04 3cewA 125 1.08e-04 1yfuA 174 1.86e-04 b.82.1.20 123094 2qnkA 286 2.69e-04 3fz3A 531 2.90e-04 2e9qA 459 3.02e-04 2o1qA 145 3.86e-04 b.82.1.21 148547 2pytA 133 4.42e-04 b.82.1.24 149957 3lagA 98 4.81e-04 3c3vA 510 5.19e-04 2oziA 98 5.59e-04 2gu9A 113 1.52e-03 3lwcA 119 1.64e-03 1qwrA 319 1.72e-03 b.82.1.3 96491 2oa2A 148 1.89e-03 1zvfA 176 2.05e-03 b.82.1.20 146029 2opkA 112 2.27e-03 2b8mA 117 2.96e-03 b.82.1.18 128092 2phlA 397 3.19e-03 1dgwA b.82.1.2,b.82.1.2 28082,28083 1vr3A 191 3.40e-03 b.82.1.6 120431 3eqeA 171 3.90e-03 2b5hA 200 5.58e-03 b.82.1.19 127894 3es1A 172 6.44e-03 2atfA 200 7.85e-03 b.82.1.19 127290 3elnA 200 7.85e-03 b.82.1.19 158185 2ozjA 114 1.31e-02 2gm6A 208 1.47e-02 b.82.1.19 147130 2i45A 107 1.61e-02 1x82A 190 2.39e-02 b.82.1.7 114955 3es4A 116 2.75e-02 1qxrA 189 2.75e-02 b.82.1.7 96552 2gc1A 188 2.95e-02 b.82.1.7 134928 1y9qA 192 2.95e-02 a.35.1.8,b.82.1.15 116592,116593 3fjsA 114 3.32e-02 2bnmA 198 3.91e-02 a.35.1.3,b.82.1.10 128835,128836 1zx5A 300 4.78e-02 b.82.1.3 125763 3eo6A 106 5.96e-02 1xjaA 178 7.33e-02 b.82.4.1 115382 2wfpA 394 9.78e-02 3h1wA 393 9.98e-02 2arcA 164 1.02e-01 2arcA b.82.4.1 28148 3g7dA 443 1.13e-01 1vrbA 342 1.37e-01 b.82.2.11 120450 3hqxA 111 1.82e-01 1o5uA 101 2.94e-01 b.82.1.8 92518 1dgwA 178 3.03e-01 1dgwA b.82.1.2 28090 2zklA 369 5.19e-01 2b9uA 176 5.46e-01 1ywkA 289 6.88e-01 b.82.1.13 124155 3esgA 193 7.53e-01 2vpvA 166 7.71e-01 3bcwA 123 1.10e+00 1pmi 440 1.44e+00 1pmi 1pmiA 440 1.44e+00 b.82.1.3 28114 2q2gA 180 1.70e+00 1ep0A 185 1.72e+00 1dzrA b.82.1.1 28080 3e5zA 296 1.80e+00 1e5rA 290 1.90e+00 1e5rA b.82.2.4 59276 2fuqA 747 1.99e+00 3e7jA 749 2.02e+00 2zgwA 235 2.46e+00 b.34.1.1,d.104.1.2 154421,154422 2pa7A 141 2.47e+00 b.82.1.1 149339 1cauB 184 2.65e+00 1caxB b.82.1.2 28103 1r6vA 671 3.03e+00 c.41.1.1 111710 1op3H 225 3.25e+00 b.1.1.1,b.1.1.2 87208,87209 2dxuA 235 3.50e+00 2e1hA 235 3.55e+00 1yllA 200 3.99e+00 b.82.1.17 123653 3h55A 400 4.71e+00 3mmlA 318 5.40e+00 1vp6A 138 5.44e+00 b.82.3.2 113939 1wqwA 235 6.09e+00 b.34.1.1,d.104.1.2 121179,121180 1rvxA 327 6.14e+00 b.19.1.2 97937 1kmoA 774 6.59e+00 f.4.3.3 72753 1wj9A 211 7.25e+00 d.58.53.1,d.58.53.1 114694,114695 1eybA 471 7.49e+00 1ey2A b.82.1.4 28115 2x7lA 231 8.34e+00 2qtwB 546 8.40e+00 1u2cA 246 8.43e+00 b.1.6.2,d.272.1.1 107610,107611 2yu1A 451 9.15e+00 3dl3A 119 9.24e+00 b.82.2.13 157762 1vqoA 240 9.68e+00 b.34.5.3,b.40.4.5 120361,120362 1jguH 217 1.03e+01 b.1.1.1,b.1.1.2 66688,66689 2p4eA 692 1.06e+01 1ztxH 219 1.06e+01 b.1.1.2 125659 1n0xH 230 1.06e+01 b.1.1.1,b.1.1.2 91528,91529 2dduA 387 1.06e+01 1mexH 215 1.14e+01 b.1.1.1,b.1.1.2 91257,91258 1zrrA 179 1.17e+01 b.82.1.6 125555 3gyrA 612 1.21e+01 3d0jA 140 1.27e+01 3g7gA 158 1.27e+01 2eceA 462 1.38e+01 1cs1A 386 1.38e+01 1ibjA c.67.1.3 34399 3hzaA 174 1.41e+01 1sixA 174 1.42e+01 b.85.4.1 98892 1ru7A 327 1.42e+01 b.19.1.2 97837 3ie4A 107 1.52e+01 3cfsB 414 1.56e+01 2as9A 210 1.60e+01 1eylA 186 1.60e+01 1wba b.42.4.1 25593 3eetA 274 1.62e+01 1wy2A 351 1.65e+01 1znpA 154 1.66e+01 b.82.1.16 125394 1nhcA 336 1.67e+01 b.80.1.3 91879 2fluX 308 1.67e+01 b.68.11.1 133750 1x2jA 316 1.67e+01 b.68.11.1 121643 3dkqA 243 1.70e+01 1qs1A 462 1.73e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1udxA 416 1.81e+01 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2g8cO 251 1.82e+01 3b7fA 394 1.85e+01 2c0zA 216 1.90e+01 b.82.1.1 129615 1wckA 220 1.92e+01 1tc1A 220 1.98e+01 1tc1A c.61.1.1 34083 2bm0A 691 2.04e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 1pv9A 348 2.11e+01 c.55.2.1,d.127.1.1 95157,95158 1ogoX 574 2.13e+01 b.133.1.1,b.80.1.10 92925,92926 1sjnA 170 2.13e+01 b.85.4.1 98896 1po0A 751 2.14e+01 f.4.3.3 94960 2vxsH 225 2.16e+01 1c3pA 375 2.16e+01 1c3pA c.42.1.2 32606 2c4xA 260 2.17e+01 1zgkA 308 2.20e+01 b.68.11.1 145998 1pmjX 185 2.26e+01 b.18.1.18 104194 2vu4A 273 2.27e+01 1bw0A 416 2.30e+01 1bw0A c.67.1.1 34385 3ckaA 320 2.35e+01 3kalA 499 2.39e+01 3k4iA 244 2.49e+01 1h6dA 433 2.53e+01 c.2.1.3,d.81.1.5 65656,65657 2rg4A 216 2.56e+01 1ofdA 1520 2.58e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 3gd3A 535 2.63e+01 3dlmA 213 2.66e+01 3dwoX 451 2.78e+01 1xovA 326 2.85e+01 b.34.11.4,c.56.5.6 122206,122207 3b2mA 295 2.97e+01 1ahsA 126 2.97e+01 1ahsA b.19.1.1 23794 3e9tA 114 2.98e+01 1chd 203 3.00e+01 1chd 1chdA 203 3.00e+01 c.40.1.1 32478 2elfA 370 3.12e+01 3f6zB 101 3.29e+01 2bh9A 489 3.36e+01 1sq9A 397 3.46e+01 b.69.4.1 105889 2wy3B 158 3.47e+01 1p16A 395 3.54e+01 b.40.4.6,d.142.2.3 87661,87662 1xgsA 295 3.57e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 1f60A 458 3.61e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2g5rA 127 3.62e+01 b.1.1.1 134674 2wwuA 371 3.69e+01 1irxA 523 3.76e+01 a.97.1.2,c.26.1.1 71378,71379 2obtA 327 3.83e+01 3ky8A 197 3.87e+01 1hn0A 1021 3.89e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1ajkA 214 3.94e+01 1axkA b.29.1.2 24176 2bf6A 449 4.00e+01 2r0hA 164 4.02e+01 1mq7A 154 4.08e+01 b.85.4.1 79404 1vioA 243 4.11e+01 d.265.1.3,d.66.1.5 100762,100763 1m6iA 493 4.20e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2c7pA 327 4.28e+01 c.66.1.26 130080 2r6hA 290 4.34e+01 1cvrA 435 4.38e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1gxcA 149 4.53e+01 b.26.1.2 70687 2vunA 386 4.58e+01 3hbkA 245 4.62e+01 1c5eA 95 4.67e+01 1c5eA b.85.2.1 28317 2fp7B 172 4.68e+01 b.47.1.3 133899 3k3oA 371 4.69e+01 1hv9A 456 4.74e+01 1fwyA b.81.1.4,c.68.1.5 28060,34518 3ginA 160 4.87e+01 1nh1A 330 4.88e+01 e.45.1.1 91871 3m99A 471 4.89e+01 3c75H 426 4.95e+01 1sdwA 314 4.95e+01 b.121.1.2,b.121.1.2 98810,98811 2cw8A 537 4.98e+01 2dpkA 152 5.03e+01 b.1.27.1 131616 1qxpA 900 5.05e+01 a.39.1.8,a.39.1.8,b.14.1.1,d.3.1.3 96543,96544,96545,96546 2p4mA 219 5.07e+01 1vmoA 163 5.10e+01 1vmoA b.77.1.1 27974 1lnsA 763 5.11e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1ej6A 1289 5.15e+01 i.7.1.1 45967 3gldA 295 5.26e+01 2vmhA 151 5.27e+01 b.18.1.33 153327 2ftbA 125 5.31e+01 b.60.1.2 134057 1cpnA 208 5.34e+01 b.29.1.2 24175 2hkdA 320 5.40e+01 2oyzA 94 5.41e+01 b.82.1.22 149082 3km3A 206 5.42e+01 2qo3A 915 5.46e+01 2kfbA 182 5.47e+01 2rftA 344 5.54e+01 2p62A 241 5.62e+01 e.67.1.1 149267 1a0qH 217 5.65e+01 1mfa b.1.1.1,b.1.1.2 20287,21279 1o7sA 127 5.65e+01 b.1.1.1 86644 3bu2A 199 5.76e+01 2e26A 725 5.85e+01 2dr1A 386 5.86e+01 3el6A 313 5.93e+01 3dgeA 258 5.95e+01 2bnqD 203 6.01e+01 b.1.1.1,b.1.1.2 144996,144997 3a7qA 725 6.03e+01 2w7sA 200 6.04e+01 2ixkA 184 6.09e+01 2wn6A 463 6.10e+01 1n26A 325 6.20e+01 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 3k2oA 336 6.26e+01 2rctA 141 6.33e+01 2zooA 442 6.35e+01 2vpjA 301 6.43e+01 1vj0A 380 6.44e+01 b.35.1.2,c.2.1.1 100786,100787 2d6fA 435 6.50e+01 b.38.3.1,c.88.1.1 131303,131304 3d3aA 612 6.63e+01 3bfpA 194 6.65e+01 b.81.1.8 155234 6mhtA 327 6.73e+01 6mhtA c.66.1.26 34226 1yudA 170 6.73e+01 b.82.1.16 124046 2gc7A 386 6.80e+01 b.69.2.1 134954 1ospO 257 6.91e+01 1ospO b.76.1.1 27971 1xpnA 170 6.94e+01 b.3.7.1 115767 1pmhX 185 6.97e+01 b.18.1.18 104193 1qu5A 182 6.97e+01 1qu5A b.26.1.2 23922 1fm2B 520 6.97e+01 1fm2B 3g5cA 510 7.04e+01 2qqjA 325 7.18e+01 2a6hC 1119 7.20e+01 e.29.1.1 126264 1n13B 113 7.24e+01 3gi9H 223 7.37e+01 8fabB 224 7.42e+01 1igtB b.1.1.1,b.1.1.2 19773,20883 2dv6A 447 7.44e+01 3bs6A 280 7.53e+01 3gkeA 349 7.54e+01 3fvcA 663 7.65e+01 2wn4A 463 7.67e+01 3jv1A 182 7.71e+01 1f3zA 161 7.75e+01 b.84.3.1 28273 3ia4A 162 7.78e+01 3adfA 226 7.91e+01 2rijA 387 7.94e+01