# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1j58A 385 5.63e-21 b.82.1.2 71531 1tq5A 242 1.76e-20 b.82.1.12 119311 2qdrA 303 1.27e-15 1j1lA 290 1.38e-14 b.82.1.12 90766 2p17A 277 4.36e-14 1sefA 274 5.62e-14 b.82.1.11 105452 2vqaA 361 1.18e-13 1sfnA 246 2.25e-12 b.82.1.11 105496 1rc6A 261 3.35e-12 b.82.1.11 97287 2pfwA 116 9.18e-12 1vj2A 126 9.29e-12 b.82.1.10 100796 3ht1A 145 7.26e-11 3h7jA 243 7.92e-11 3cjxA 165 1.68e-10 1o4tA 133 1.68e-10 b.82.1.9 86622 2q1zB 195 4.16e-10 2et1A 201 3.11e-09 b.82.1.2 132351 2vecA 256 3.25e-09 1fi2A 201 3.68e-09 1fi2A b.82.1.2 59845 3l2hA 162 4.23e-09 3i7dA 163 6.55e-09 2h0vA 338 1.74e-08 1y3tA 337 1.84e-08 b.82.1.5 122600 2o8qA 134 4.49e-08 2f4pA 147 4.90e-08 b.82.1.9 132933 3h8uA 125 9.58e-08 3ebrA 159 3.02e-07 3kgzA 156 6.08e-07 3ibmA 167 7.58e-07 1v70A 105 9.20e-07 b.82.1.9 113555 1lr5A 163 1.18e-06 b.82.1.2 74215 1yhfA 115 1.99e-06 b.82.1.9 123176 3d82A 102 2.10e-06 3cewA 125 4.85e-06 2pytA 133 7.45e-06 b.82.1.24 149957 1yfuA 174 7.87e-06 b.82.1.20 123094 2q30A 110 1.14e-05 2o1qA 145 1.42e-05 b.82.1.21 148547 3eqeA 171 2.76e-05 2d40A 354 3.26e-05 b.82.1.23 146454 2opkA 112 3.29e-05 3lwcA 119 3.94e-05 3es1A 172 7.69e-05 2oa2A 148 8.99e-05 3elnA 200 9.15e-05 b.82.1.19 158185 2b5hA 200 1.24e-04 b.82.1.19 127894 2gu9A 113 1.37e-04 2atfA 200 1.89e-04 b.82.1.19 127290 2fqpA 97 2.82e-04 2phdA 368 2.84e-04 b.82.1.23 149468 2b8mA 117 3.00e-04 b.82.1.18 128092 2ea7A 434 3.94e-04 3fjsA 114 4.65e-04 2gm6A 208 6.52e-04 b.82.1.19 147130 2oziA 98 8.90e-04 3lagA 98 1.20e-03 1zvfA 176 1.22e-03 b.82.1.20 146029 2e9qA 459 1.23e-03 3es4A 116 1.50e-03 2i45A 107 1.59e-03 1vr3A 191 2.03e-03 b.82.1.6 120431 2qnkA 286 2.50e-03 1qwrA 319 4.34e-03 b.82.1.3 96491 1qxrA 189 4.45e-03 b.82.1.7 96552 2phlA 397 4.87e-03 1dgwA b.82.1.2,b.82.1.2 28082,28083 1x82A 190 5.93e-03 b.82.1.7 114955 2gc1A 188 6.91e-03 b.82.1.7 134928 1od5A 492 1.03e-02 b.82.1.2,b.82.1.2 86832,86833 2ozjA 114 1.12e-02 2d5fA 493 1.54e-02 3eo6A 106 1.96e-02 3fz3A 531 2.70e-02 1juhA 350 2.76e-02 b.82.1.5 71884 1vrbA 342 2.81e-02 b.82.2.11 120450 1dgwA 178 4.94e-02 1dgwA b.82.1.2 28090 1y9qA 192 5.69e-02 a.35.1.8,b.82.1.15 116592,116593 1o5uA 101 7.29e-02 b.82.1.8 92518 1xjaA 178 8.99e-02 b.82.4.1 115382 2arcA 164 9.54e-02 2arcA b.82.4.1 28148 2pa7A 141 1.73e-01 b.82.1.1 149339 1vp6A 138 1.75e-01 b.82.3.2 113939 3bcwA 123 1.81e-01 1yllA 200 1.99e-01 b.82.1.17 123653 3c3vA 510 2.19e-01 3hqxA 111 2.89e-01 2bnmA 198 3.81e-01 a.35.1.3,b.82.1.10 128835,128836 1cauB 184 1.22e+00 1caxB b.82.1.2 28103 1zrrA 179 2.13e+00 b.82.1.6 125555 2zklA 369 2.47e+00 2vpvA 166 2.77e+00 3esgA 193 2.92e+00 1e5rA 290 3.02e+00 1e5rA b.82.2.4 59276 2x7lA 231 3.08e+00 2vxsH 225 3.35e+00 3dl3A 119 3.81e+00 b.82.2.13 157762 2dxuA 235 3.89e+00 1x0hA 112 4.23e+00 d.332.1.1 121547 2zgwA 235 4.79e+00 b.34.1.1,d.104.1.2 154421,154422 3dkqA 243 5.99e+00 1pg6A 243 6.60e+00 b.82.5.2 94673 1th8A 145 6.83e+00 d.122.1.3 106908 3cswA 285 7.04e+00 3hgmA 147 7.48e+00 2flhA 155 7.54e+00 1n0xH 230 8.10e+00 b.1.1.1,b.1.1.2 91528,91529 1wgpA 137 8.95e+00 b.82.3.2 114619 2awxA 105 9.29e+00 2x7zA 99 9.31e+00 3g7dA 443 9.72e+00 1zx5A 300 9.93e+00 b.82.1.3 125763 1e10A 128 1.05e+01 1awd d.15.4.1 59154 2fe5A 94 1.08e+01 b.36.1.1 133323 1wqwA 235 1.10e+01 b.34.1.1,d.104.1.2 121179,121180 3bb6A 127 1.16e+01 b.82.2.13 155045 1zhvA 134 1.18e+01 d.58.18.8,d.58.18.8 125109,125110 1xruA 282 1.23e+01 b.82.1.13 122262 8fabB 224 1.26e+01 1igtB b.1.1.1,b.1.1.2 19773,20883 1cjaA 342 1.26e+01 1cjaA d.144.1.3 41708 3iezA 114 1.29e+01 2a1xA 308 1.30e+01 b.82.2.9 126022 1n91A 108 1.43e+01 d.206.1.1 80326 2ij2A 470 1.51e+01 a.104.1.1 137449 1vbiA 344 1.57e+01 2e1hA 235 1.61e+01 2b9uA 176 1.65e+01 2q2gA 180 1.75e+01 3lazA 99 1.89e+01 1doiA 128 1.93e+01 d.15.4.1 37676 1xwiA 322 1.94e+01 1p16A 395 2.00e+01 b.40.4.6,d.142.2.3 87661,87662 1yoxA 250 2.03e+01 b.82.5.2 123789 3g7gA 158 2.03e+01 1k4mA 213 2.03e+01 c.26.1.3 77258 3bpzA 202 2.16e+01 1op3H 225 2.21e+01 b.1.1.1,b.1.1.2 87208,87209 1qxpA 900 2.25e+01 a.39.1.8,a.39.1.8,b.14.1.1,d.3.1.3 96543,96544,96545,96546 3kgkA 110 2.29e+01 1yumA 242 2.33e+01 1omiA 248 2.39e+01 b.82.3.3,a.4.5.4 87079,87080 1z77A 200 2.45e+01 a.4.1.9,a.121.1.1 124588,124589 1b7yB 785 2.48e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,b.153.1.1 16301,16302,25312,39311,40780,41456 3idbB 161 2.50e+01 1r3eA 309 2.51e+01 b.122.1.1,d.265.1.2 96907,96908 1tb3A 352 2.72e+01 c.1.4.1 119205 3ie4A 107 2.73e+01 2v5iA 559 2.73e+01 2wy3B 158 2.74e+01 2rg4A 216 2.76e+01 1n13B 113 2.76e+01 1wj9A 211 2.82e+01 d.58.53.1,d.58.53.1 114694,114695 2id6A 202 3.00e+01 a.4.1.9,a.121.1.1 147624,147625 2pamA 141 3.04e+01 b.82.1.1 149348 1xovA 326 3.05e+01 b.34.11.4,c.56.5.6 122206,122207 3fhiB 154 3.24e+01 2qjvA 270 3.24e+01 1gg4A 452 3.29e+01 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2k7qA 191 3.37e+01 1wjgA 137 3.44e+01 c.26.2.4 114696 1rt8A 513 3.45e+01 a.40.1.1 105095 1ru4A 400 3.52e+01 b.80.1.9 97836 3hdvA 136 3.55e+01 1q3eA 207 3.60e+01 b.82.3.2 95669 1im8A 244 3.78e+01 c.66.1.14 66212 2nysA 176 3.86e+01 b.136.1.2 148518 1mnnA 340 4.02e+01 b.2.5.7 79324 1n8yC 608 4.08e+01 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 80314,80315,80316,80317 2vobA 652 4.12e+01 1q67A 231 4.13e+01 b.55.1.7 95960 2j23A 121 4.21e+01 2w2jA 291 4.23e+01 1j6wA 175 4.32e+01 1j98A d.185.1.2 62663 2gu2A 312 4.44e+01 c.56.5.7 147177 1tr8A 102 4.49e+01 1eylA 186 4.49e+01 1wba b.42.4.1 25593 3e97A 231 4.51e+01 2q4zA 312 4.55e+01 1q0xH 221 4.69e+01 b.1.1.1,b.1.1.2 95517,95518 1ep0A 185 4.69e+01 1dzrA b.82.1.1 28080 2bibA 547 4.71e+01 b.109.1.1,d.157.1.8 128581,128582 3eggC 170 4.79e+01 2a9mH 126 4.83e+01 1iz6A 138 4.89e+01 b.34.5.2,b.40.4.5 76976,76977 3eghC 170 4.95e+01 1x24A 180 5.05e+01 1g5cA 170 5.07e+01 1g5cA c.53.2.1 60264 1zo4A 473 5.30e+01 2bgcA 238 5.42e+01 a.4.5.4,b.82.3.3 128458,128459 2kctA 94 5.50e+01 3hf2A 482 5.50e+01 2gauA 232 5.58e+01 a.4.5.4,b.82.3.2 134894,134895 3cg6A 146 5.58e+01 2qmwA 267 5.60e+01 c.94.1.1,d.58.18.3 150899,150900 2dpkA 152 5.61e+01 b.1.27.1 131616 3khwA 204 5.70e+01 1nh1A 330 5.73e+01 e.45.1.1 91871 1qhlA 227 5.74e+01 1qhlA c.37.1.12 32382 3kx4A 470 5.80e+01 3ig3A 627 5.91e+01 1rl3A 288 5.94e+01 b.82.3.2,b.82.3.2 104975,104976 1vqzA 341 5.98e+01 d.224.1.3,d.104.1.3 120426,120427 2bnqD 203 6.07e+01 b.1.1.1,b.1.1.2 144996,144997 1u2cA 246 6.14e+01 b.1.6.2,d.272.1.1 107610,107611 1q74A 303 6.15e+01 c.134.1.1 96019 3bkzA 201 6.19e+01 1wckA 220 6.21e+01 3kx3A 470 6.23e+01 1iuzA 98 6.24e+01 b.6.1.1 22861 1bu7A 455 6.33e+01 1bu7A a.104.1.1 18937 3gd3A 535 6.34e+01 2jmpA 107 6.44e+01 1fyhA 258 6.50e+01 1d9cA a.26.1.3,a.26.1.3 16907,16908 1ne6A 283 6.52e+01 b.82.3.2,b.82.3.2 91831,91832 3k7nA 397 6.54e+01 3kc6A 204 6.62e+01 1zy4A 303 6.68e+01 2wr8A 259 6.69e+01 1f3zA 161 6.72e+01 b.84.3.1 28273 1j9yA 385 6.84e+01 1j9yA c.1.8.3 62791 1v5mA 136 6.85e+01 b.55.1.1 108379 2r6uA 148 6.88e+01 3k2iA 422 6.89e+01 2iekA 200 6.90e+01 a.4.1.9,a.121.1.1 147647,147648 1agjA 242 6.97e+01 1agjA b.47.1.1 25827 1mexH 215 6.97e+01 b.1.1.1,b.1.1.2 91257,91258 2fmyA 220 7.06e+01 3kx5A 470 7.19e+01 1phkA 298 7.21e+01 d.144.1.7 41635 2wfpA 394 7.25e+01 2a9nH 126 7.26e+01 2fdiA 211 7.28e+01 b.82.2.10 133311 1gg3A 279 7.38e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 2d93A 134 7.42e+01 3lmlA 460 7.45e+01 2qt5A 200 7.47e+01 1dueA 242 7.52e+01 b.47.1.1 76140 2ixkA 184 7.52e+01 2whmA 385 7.54e+01 2a19B 284 7.54e+01 1fiqC 763 7.60e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 2ookA 127 7.68e+01 c.13.2.2 148930 2py5A 575 7.70e+01 c.55.3.5,e.8.1.1 149928,149929 1w4sA 174 7.73e+01 3hqkP 219 7.91e+01 2pqfA 198 7.91e+01 3gd4A 511 7.92e+01 1vj0A 380 7.94e+01 b.35.1.2,c.2.1.1 100786,100787 1zkgA 212 7.95e+01 a.4.1.9,a.121.1.1 125194,125195 1yzsA 121 7.99e+01 d.268.1.4 145949