# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jgcA	161	20.23	a.25.1.1	66673
2hq9A	149	26.10	b.45.1.1	136659
2ko6A	89	31.72		
1jetA	517	35.97	c.94.1.1	35718
1t3qA	168	50.27	a.56.1.1,d.15.4.2	106367,106368
2ou5A	175	51.09		
2htiA	185	52.04	b.45.1.1	136744
2yskA	145	53.63		
1n62A	166	55.45	a.56.1.1,d.15.4.2	80090,80091
3hrdD	160	56.30		
2qqyA	149	63.24		
3cqbA	107	64.65		
2ywxA	157	64.82		
2depA	356	66.46		
1o4vA	183	68.03	c.23.8.1	86628
1j75A	67	68.53	a.4.5.19	62673
1u11A	182	69.10	c.23.8.1	107576
1acc	735	73.31		
1ei9A	279	74.50	c.69.1.13	34713
2a8kA	108	78.82	d.243.1.2	126404
2f05A	105	80.30	a.59.1.1	132651
2i7hA	189	82.80		
2pzzA	147	83.28	d.77.1.2	149977
3kuuA	174	87.85		
2jovA	85	88.14	d.349.1.1	148162