# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cqbA	107	21.19		
1t3qA	168	34.05	a.56.1.1,d.15.4.2	106367,106368
3hrdD	160	34.26		
3h51A	156	45.64		
2ou5A	175	52.04		
2ko6A	89	56.21		
2f05A	105	56.24	a.59.1.1	132651
1rm6C	161	73.81	a.56.1.1,d.15.4.2	111876,111877
1jgcA	161	76.89	a.25.1.1	66673
1pydA	556	77.13	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
1ei9A	279	82.64	c.69.1.13	34713
3lfkA	129	83.65		
3chxA	392	85.28