# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1t3qA	168	18.41	a.56.1.1,d.15.4.2	106367,106368
3h51A	156	19.42		
3cqbA	107	20.20		
1lf6A	684	20.82	a.102.1.5,b.30.5.5	77918,77919
3hrdD	160	23.43		
1n62A	166	27.34	a.56.1.1,d.15.4.2	80090,80091
2f05A	105	30.76	a.59.1.1	132651
1rm6C	161	30.76	a.56.1.1,d.15.4.2	111876,111877
2ou5A	175	37.59		
3chxA	392	38.18		
3lfkA	129	42.47		
1ei9A	279	42.54	c.69.1.13	34713
1jgcA	161	44.42	a.25.1.1	66673
1c30B	382	50.34	c.8.3.1,c.23.16.1	30736,31413
2ko6A	89	63.45		
2depA	356	67.20		
1pydA	556	68.95	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
2avxA	171	72.55		
2r5kA	424	74.60		
1iktA	120	76.57	d.106.1.1	66188
2zf8A	278	76.76		
2kkmA	144	78.78		
2wyeB	546	82.30		
1w3oA	216	87.29	b.45.1.1	144544