# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cqbA	107	23.04		
1lf6A	684	24.77	a.102.1.5,b.30.5.5	77918,77919
1t3qA	168	27.55	a.56.1.1,d.15.4.2	106367,106368
2f05A	105	28.33	a.59.1.1	132651
3lfkA	129	28.37		
3h51A	156	29.55		
3hrdD	160	31.68		
2depA	356	39.84		
1jgcA	161	47.28	a.25.1.1	66673
2ou5A	175	50.88		
1ei9A	279	51.46	c.69.1.13	34713
1rm6C	161	52.61	a.56.1.1,d.15.4.2	111876,111877
1n62A	166	54.85	a.56.1.1,d.15.4.2	80090,80091
2gdqA	382	55.39	c.1.11.2,d.54.1.1	135020,135021
2r5kA	424	70.72		
1mw9X	592	72.25	e.10.1.1	91480
2zf8A	278	74.43		
1pydA	556	75.12	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
1ecl	597	81.84		
1c30B	382	82.37	c.8.3.1,c.23.16.1	30736,31413
3eyrA	178	82.70		
1oaoA	674	83.56	e.26.1.2	86744
1elkA	157	88.06	a.118.9.2	19217