# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3dy0A	336	1.804		
1mtpA	323	4.036	e.1.1.1	85107
1kpgA	287	5.227	c.66.1.18	68735
2qugA	394	8.626		
3lq9A	134	9.97		
2gx5A	170	10.13		
1n2eA	300	11.56	c.26.1.4	85268
1ghsA	306	11.91	c.1.8.3	28840
1qlpA	394	13.46	e.1.1.1	42628
2cyyA	151	14.31	a.4.5.32,d.58.4.2	131028,131029
2e7xA	150	14.83		
1xkpC	143	18.18	d.198.1.1	122088
2dt8A	280	18.70		
3hnrA	220	22.95		
3cqbA	107	23.16		
2pn6A	150	23.51		
1wsuA	124	26.43	a.4.5.35,a.4.5.35	121245,121246
1kfiA	572	31.40	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68555,68556,68557,68558
3cuqB	218	31.41		
1yxaA	398	31.64		
2a84A	300	36.60	c.26.1.4	126389
2ns0A	85	36.85	a.4.5.76	148381
1qf5A	431	37.22	c.37.1.10	32212
3gyyA	341	37.57		
2rivA	343	37.70		
1imvA	398	38.07	e.1.1.1	62591
1sfuA	75	38.17	a.4.5.19	105503
1lfpA	249	38.83	e.39.1.1	73885
2b18A	164	39.74		
2v95A	371	40.36		
1vixA	420	41.26	c.56.5.4,d.58.19.1	100777,100778
3eglA	277	42.52		
1ka8A	100	44.87	a.4.5.20	72241
3fddA	533	45.76		
2eb0A	307	47.06		
1y8qA	346	47.14		
1vpvA	300	47.28	c.119.1.1	113975
1oc0A	379	47.65	e.1.1.1	86790
2qb7A	397	48.10		
2yvlA	248	50.13		
3covA	301	51.00	c.26.1.4	156877
3fgqA	397	53.93		
3le2A	393	56.25		
3f8mA	248	59.14		
2bhmA	164	62.08	d.17.4.26	146143
1fr2B	134	62.50	d.4.1.1	83257
1as4A	341	62.77	e.1.1.1	42623
1su0B	159	64.40	d.224.1.2	106015
1db2A	377	65.15	e.1.1.1	42672
2frhA	127	65.98	a.4.5.28	133988
3a0yA	152	66.01		
1i58A	189	66.46	d.122.1.3	61773
3dlwA	411	66.88		
2ipbA	230	66.97		
1vdkA	466	69.33	a.127.1.1	100561
2a8kA	108	69.44	d.243.1.2	126404
1kx5C	128	69.73	a.22.1.1	77595
2nutC	196	69.76		
2jvlA	107	71.24		
2oayA	391	71.80		
2cc3A	150	73.53	d.17.4.26	146384
1k8kE	178	74.56	a.148.1.1	68311
2fhzB	108	74.96	d.243.1.2	133506
3c8nA	356	80.51		
2dt5A	211	81.68	a.4.5.38,c.2.1.12	131708,131709
1r13A	148	82.36	d.169.1.1,h.1.1.1	96782,96783
3i05A	395	82.71		
1m1eB	81	82.86	a.161.1.1	78400
1wznA	252	83.26	c.66.1.43	121525
3f45A	109	85.98		
1l1eA	287	88.64	c.66.1.18	73454
3hx8A	129	88.97		
3hhtB	229	89.98