# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lfkA	129	25.20		
3bu8A	235	28.02	a.146.1.1	155595
3cqbA	107	34.36		
1rscI	111	46.71	d.73.1.1	118620
1rblI	109	50.53	d.73.1.1	118599
1gesA	450	53.97	c.3.1.5,c.3.1.5,d.87.1.1	30473,30474,40168
1l8rA	101	58.14	a.6.1.4	73700
3cymA	440	59.29		
2qswA	100	63.99	d.58.18.13	151326
2ko6A	89	69.38		
3chxA	392	71.26		
1i7dA	659	76.75	e.10.1.1	61886
1trb	320	76.90		
2i5fA	109	78.22	b.55.1.1	147512
1n7kA	234	80.40	c.1.10.1	85374
1k6dA	220	82.28	c.124.1.2	72082
2q4pA	170	83.48	a.204.1.2	150041
2gwhA	298	86.74		
1wb9A	800	87.11	a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1	120833,120834,120835,120836