# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ede	310	5.051		
3lfkA	129	6.783		
2zycA	170	9.747		
3g0oA	303	22.04		
3fi7A	183	22.65		
2pn0A	141	30.12		
1b71A	191	30.34	a.25.1.1,g.41.5.1	16647,45246
1bj4A	470	32.33	c.67.1.4	34479
1s48A	609	41.88	e.8.1.4	98475
2furA	209	43.49	b.45.1.1	134185
2d1pA	140	44.39	c.114.1.1	131136
2h2zA	306	44.59		
1ryt	190	47.31		
1q2wA	308	47.95	b.47.1.4	88355
1l8rA	101	50.98	a.6.1.4	73700
1lopA	164	51.90	b.62.1.1	27510
1k6dA	220	52.34	c.124.1.2	72082
3dsqA	288	52.65		
2amdA	311	52.77		
1d6mA	653	56.24	e.10.1.1	43248
1gpiA	431	57.75	b.29.1.10	65450
3cumA	302	61.15	a.100.1.1,c.2.1.6	156995,156996
1wdvA	152	64.14	d.116.1.1	114539
1yrtA	364	64.83		
1lkoA	191	65.68	a.25.1.1,g.41.5.1	78063,78064
1t4hA	290	67.31	d.144.1.7	106420
2bbsA	290	67.61		
1i7dA	659	70.31	e.10.1.1	61886
2hy5C	102	71.48	c.114.1.2	136867
2ko6A	89	71.85		
1gkuB	1054	73.23	c.37.1.16,c.37.1.16,e.10.1.1	65257,65258,65259
1p9bA	442	75.34	c.37.1.10	94385
2z0xA	158	75.50		
1rfkA	98	79.08		
3ea8A	306	79.11		
1b4fA	82	80.00	a.60.1.2	17934
3h51A	156	80.25		
1j2mA	99	80.92	a.165.1.1	84018
3fzdA	301	80.93		
3e91A	306	81.65		
1x2iA	75	81.70	a.60.2.5	121641
3fhtA	412	81.89		
1ta3B	303	83.52	c.1.8.3	106732
3g07A	292	83.61		
1fzdA	201	83.78	d.171.1.1	42484
1n7kA	234	85.60	c.1.10.1	85374
2a8kA	108	85.96	d.243.1.2	126404
3mavA	395	86.68