# List of top-scoring protein chains for T0581.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1n71A 180 2.95e+00 d.108.1.1 85370 1b87A 181 2.96e+00 1b87A d.108.1.1 40797 2a4nA 182 2.96e+00 d.108.1.1 126159 3huiA 126 3.70e+00 1rw4A 272 7.05e+00 c.37.1.10 97962 2c8vA 288 7.16e+00 c.37.1.10 130128 1g20E 289 7.17e+00 1cp2A c.37.1.10 32247 2vk1A 563 8.02e+00 1pydA 556 8.14e+00 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2w93A 563 8.42e+00 1pvdA 555 8.44e+00 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2gm2A 132 8.64e+00 1de0A 289 1.01e+01 1cp2A c.37.1.10 32255 2zk7A 257 1.05e+01 1xd8A 289 1.06e+01 2afhE 289 1.06e+01 c.37.1.10 126683 2dtxA 264 1.09e+01 3fc7A 125 1.11e+01 1qpbA 563 1.27e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1rtzA 152 1.28e+01 d.58.30.1 97831 2vk8A 563 1.30e+01 2ko6A 89 1.31e+01 1xdbA 289 1.49e+01 1m70A 190 1.51e+01 a.3.1.4,a.3.1.4 91200,91201 3loyA 633 1.66e+01 1g63A 181 1.69e+01 1g5qA c.34.1.1 60299 1kpeB 125 1.84e+01 1kpf d.13.1.1 37509 1n62A 166 1.84e+01 a.56.1.1,d.15.4.2 80090,80091 1kpfA 126 1.88e+01 d.13.1.1 37507 2vk4A 563 1.97e+01 1qvzA 237 2.29e+01 c.23.16.2 96453 2dlsA 93 2.43e+01 1tu7A 208 2.48e+01 a.45.1.1,c.47.1.5 112653,112654 1qvvA 237 2.64e+01 c.23.16.2 96442 1rw7A 243 2.67e+01 c.23.16.2 97963 1hmlA 142 2.73e+01 d.2.1.2 36598 2yw6A 183 2.79e+01 a.25.1.1 153794 3pmgA 561 2.99e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 3dm8A 143 3.15e+01 d.17.4.20 157804 3ec8A 166 3.28e+01 1dgmA 363 3.50e+01 1bx4A c.72.1.1 34936 1lioA 363 3.54e+01 c.72.1.1 73924 1liiA 363 3.60e+01 c.72.1.1 73921 2absA 383 3.60e+01 c.72.1.1 126534 2jhxA 138 3.67e+01 2jhwA 138 3.78e+01 1upfA 224 3.80e+01 1bd3A c.61.1.1 34102 2jhzA 138 3.83e+01 1bd3A 243 4.23e+01 1bd3A c.61.1.1 34098 3jv1A 182 4.29e+01 2jhsA 138 4.32e+01 1zcjA 463 4.58e+01 2g6pA 304 4.59e+01 1lpbB 449 4.61e+01 1gpl b.12.1.2,c.69.1.19 23643,34791 1kmtA 141 4.66e+01 b.1.18.8 77442 1dnpA 471 4.97e+01 1qnf a.99.1.1,c.28.1.1 18775,31630 2jhuA 138 5.07e+01 b.1.18.8 138323 2b3hA 329 5.10e+01 3dxqA 301 5.10e+01 3bfxA 296 5.20e+01 c.37.1.5 155239 3libA 290 5.45e+01 3kwsA 287 5.55e+01 2jpeA 140 5.74e+01 3icoA 268 5.85e+01 2gm8A 221 6.10e+01 a.132.1.3 135368 2x58A 727 6.34e+01 2bxwA 141 6.36e+01 2jpcA 61 6.54e+01 3iieA 401 6.54e+01 1uddA 226 6.57e+01 a.132.1.3 107776 1rhoA 145 6.62e+01 1rhoA b.1.18.8 21899 2ji0A 138 6.63e+01 2qnkA 286 6.66e+01 1ethA 448 6.75e+01 1gpl b.12.1.2,c.69.1.19 23641,34789 1jn1A 158 6.78e+01 d.79.5.1 71754 1z0kA 172 7.05e+01 c.37.1.8 124321 2k2oA 123 7.07e+01 1vh8A 170 7.15e+01 d.79.5.1 100647 2h9aB 310 7.19e+01 3lnoA 108 7.25e+01 1v06A 142 7.35e+01 3lc0A 456 7.45e+01 2wiiC 277 7.57e+01 2jhtA 138 7.68e+01 1yu9A 175 7.74e+01 c.37.1.8 124045 2qz5A 155 7.78e+01 1qvyA 139 7.95e+01 b.1.18.8 96449