# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.soe.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
2peqA	134	8.29e-01		a.280.1.1	149443
2nsaA	170	1.67e+00			
2ko6A	89	2.29e+00			
2x04A	80	3.79e+00			
3c1qA	123	5.07e+00			
2qcuA	501	5.38e+00			
3kusA	88	6.25e+00			
3hbrA	265	7.68e+00			
3bhwA	209	8.13e+00			
1fzdA	201	8.57e+00	3fib	d.171.1.1	42484
1m70A	190	1.02e+01		a.3.1.4,a.3.1.4	91200,91201
1dx4A	586	1.22e+01	2bce	c.69.1.1	34622
1v5dA	386	1.32e+01		a.102.1.2	113537
3hkxA	283	1.39e+01			
1xo5A	183	1.90e+01		a.39.1.5	115680
2hxjA	144	1.90e+01		a.136.1.1	147432
3f8mA	248	1.94e+01			
3bq9A	460	1.96e+01			
3fmsA	209	2.03e+01			
2boyA	254	2.05e+01			
3e0jB	144	2.24e+01			
3cp8A	641	2.41e+01			
3hhtB	229	2.69e+01			
1y8aA	332	2.78e+01		c.108.1.24	145913
3cqcB	227	2.93e+01			
3k2yA	109	3.15e+01			
3h1tA	590	3.19e+01			
2qzqA	152	3.23e+01			
3kyjA	144	3.25e+01			
3dm8A	143	3.33e+01		d.17.4.20	157804
3e4rA	324	3.39e+01			
1uddA	226	3.51e+01		a.132.1.3	107776
3hinA	275	3.59e+01			
3eyxA	216	3.68e+01			
3b96A	587	3.74e+01			
2d4gA	171	3.91e+01			
3mi6A	745	3.92e+01			
2qywA	102	3.93e+01			
3hztA	467	4.01e+01			
3kdqA	154	4.15e+01			
3hz8A	193	4.25e+01			
3l82A	215	4.34e+01			
3kheA	191	4.46e+01			
2uxwA	607	4.49e+01			
3ckdA	312	4.56e+01			
1uhnA	189	4.59e+01		a.39.1.5	99399
2nn6B	249	4.65e+01		d.14.1.4,d.101.1.1	148297,148298
2d4yA	463	4.65e+01			
1wudA	89	4.71e+01		a.60.8.1	121283
1bgf	124	4.74e+01	1bgf		
1bgfA	124	4.74e+01		a.90.1.1	18537
3dvwA	193	4.92e+01			
3ctdA	213	5.15e+01		a.80.1.2	156981
3e1eA	141	5.16e+01			
1xahA	354	5.30e+01			
2j5zA	221	5.39e+01			
1pjaA	302	5.40e+01		c.69.1.13	94758
3lnoA	108	5.41e+01			
3l3sA	263	5.42e+01			
3ixtC	26	5.53e+01			
2qsfX	171	5.82e+01			
3ee4A	323	6.09e+01			
1b4fA	82	6.19e+01	1b4fA	a.60.1.2	17934
2dc0A	434	6.23e+01			
3eucA	367	6.28e+01			
3mc4A	287	6.29e+01			
2fk8A	318	6.52e+01		c.66.1.18	133648
1gm5A	780	6.74e+01		a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19	65298,65299,65300,65301
1wh8A	111	6.79e+01		a.35.1.7	114636
1ax8	146	6.99e+01	1ax8		
1ax8A	146	6.99e+01		a.26.1.1	16844
3fncA	163	7.01e+01			
1zhxA	438	7.04e+01		d.338.1.1	125112
3icxA	255	7.07e+01			
1awiA	138	7.21e+01	1pne	d.110.1.1	40871
3id5A	388	7.24e+01			
1dguA	183	7.72e+01	1dguA	a.39.1.5	17333
1d3uB	201	7.83e+01	1aisB	a.74.1.2,a.74.1.2	18386,18387