# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ko6A 89 1.14e+00 1xo5A 183 1.35e+00 a.39.1.5 115680 3huiA 126 1.68e+00 2p0vA 489 2.03e+00 a.102.1.8 149142 3f27D 83 2.73e+00 2oyyA 76 2.90e+00 3kdqA 154 3.33e+00 3e4wA 320 4.42e+00 2o37A 92 4.62e+00 1n62A 166 4.66e+00 a.56.1.1,d.15.4.2 80090,80091 3c1qA 123 5.65e+00 3hinA 275 5.80e+00 2gm2A 132 6.12e+00 3eucA 367 6.25e+00 3hhtB 229 6.69e+00 1mykA 53 6.69e+00 1bazA a.43.1.1 17425 3jv1A 182 6.75e+00 1bdtA 53 6.77e+00 1bazA a.43.1.1 17433 2eulA 156 7.04e+00 a.2.1.1,d.26.1.2 132392,132393 2c5rA 67 7.04e+00 a.251.1.1 129944 3lcpC 93 8.51e+00 3dxqA 301 8.86e+00 3cqcB 227 9.59e+00 1fzdA 201 9.99e+00 3fib d.171.1.1 42484 3dm8A 143 1.11e+01 d.17.4.20 157804 3a4uB 143 1.17e+01 1bazA 53 1.20e+01 1bazA a.43.1.1 17421 1qx2A 76 1.20e+01 a.39.1.1 104622 1wudA 89 1.25e+01 a.60.8.1 121283 1dnpA 471 1.28e+01 1qnf a.99.1.1,c.28.1.1 18775,31630 1ryp2 233 1.33e+01 1ryp2 3ej9B 70 1.36e+01 1mtpA 323 1.39e+01 e.1.1.1 85107 3hadA 308 1.43e+01 2hdhA a.100.1.3,c.2.1.6 18799,30203 2z7eA 157 1.46e+01 2vogB 27 1.53e+01 1dguA 183 1.54e+01 1dguA a.39.1.5 17333 3cklA 298 1.54e+01 1g0u1 266 1.58e+01 1a6q 382 1.60e+01 1a6q 1a6qA 382 1.60e+01 a.159.1.1,d.219.1.1 75801,75802 2wkbA 125 1.67e+01 1b4fA 82 1.69e+01 1b4fA a.60.1.2 17934 1kpeA 126 1.71e+01 1kpf d.13.1.1 37508 3bj6A 152 1.71e+01 2hdhA 293 1.79e+01 2hdhA a.100.1.3,c.2.1.6 18795,30199 1kpfA 125 2.13e+01 d.13.1.1 37507 2ordA 397 2.15e+01 2hq9A 149 2.19e+01 b.45.1.1 136659 1x93A 55 2.22e+01 a.43.1.3 145859 3g0kA 148 2.22e+01 1jsuC 84 2.23e+01 1jsuC j.55.1.1 46339 2jttC 35 2.25e+01 1l8rA 101 2.27e+01 a.6.1.4 73700 3ctdA 213 2.33e+01 a.80.1.2 156981 2waxA 193 2.44e+01 1kpf 126 2.48e+01 1kpf 1keaA 221 2.50e+01 a.96.1.2 68491 2oo2A 86 2.52e+01 a.8.11.1 148917 2f23A 156 2.55e+01 a.2.1.1,d.26.1.2 132797,132798 1b1gA 75 2.56e+01 1psrA a.39.1.1 17151 2hinA 71 2.58e+01 1dunA 134 2.61e+01 b.85.4.1 28371 1wmuA 141 2.68e+01 a.1.1.2 109416 2gf4A 100 2.70e+01 a.8.10.1 135074 2jhmF 218 2.82e+01 2wnpF 217 2.82e+01 3ffdP 108 2.89e+01 2d39A 237 2.90e+01 1uhnA 189 2.90e+01 a.39.1.5 99399 2wojA 354 3.05e+01 3d5lA 221 3.10e+01 3doeB 165 3.16e+01 3hvzA 78 3.21e+01 1uhkA 191 3.22e+01 a.39.1.5 119681 1ej3A 191 3.24e+01 1ej3A a.39.1.5 17259 2kelA 56 3.31e+01 3bx6A 192 3.37e+01 1zjrA 211 3.38e+01 3mmiA 386 3.49e+01 1pk6A 133 3.53e+01 b.22.1.1 94801 2zfdA 226 3.68e+01 a.39.1.5 154406 3iiwA 365 3.73e+01 1rypA 243 3.74e+01 1pmaA d.153.1.4 41932 2uuzA 99 3.74e+01 1kw4A 89 3.78e+01 a.60.1.2 73077 2vzfA 197 3.80e+01 1tfeA 145 4.01e+01 d.43.1.1 38680 1tfe 145 4.02e+01 1tfe 1r5mA 425 4.04e+01 1g0uG 252 4.04e+01 d.153.1.4 41952 3k26A 366 4.10e+01 1p9yA 121 4.19e+01 d.241.2.1 94402 3h7xA 64 4.26e+01 2cobA 70 4.29e+01 a.4.1.15 130673 3h7zA 61 4.35e+01 1f0yA 302 4.49e+01 2hdhA a.100.1.3,c.2.1.6 18793,30197 2qjlA 99 4.49e+01 2d4gA 171 4.56e+01 1wspA 84 4.59e+01 d.15.1.8 145834 1hxvA 113 4.61e+01 d.26.1.1 71089 1g71A 347 4.62e+01 1g71A d.264.1.1 43268 1necA 216 4.66e+01 1vfrA d.90.1.1 40249 2p61A 162 4.68e+01 a.24.29.1 149266 1rm6C 161 4.69e+01 a.56.1.1,d.15.4.2 111876,111877 1v33A 366 4.70e+01 d.264.1.1 100278 1s0yB 71 4.82e+01 d.80.1.1 98315 2qzqA 152 4.92e+01 1f0xA 571 4.93e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 1zemA 262 5.18e+01 c.2.1.2 124984 2nl9B 26 5.30e+01 2fr2A 172 5.34e+01 b.60.1.8 133963 1y8aA 332 5.36e+01 c.108.1.24 145913 2f6mA 65 5.37e+01 a.2.17.1 133051 2icwG 213 5.41e+01 a.202.1.1 137251 1i3zA 103 5.44e+01 d.93.1.1 83667 1t3qA 168 5.46e+01 a.56.1.1,d.15.4.2 106367,106368 2ixeA 271 5.49e+01 1pq1B 33 5.61e+01 1ig5A 75 5.61e+01 4icb a.39.1.1 62363 2rpaA 78 5.62e+01 1o20A 427 5.63e+01 c.82.1.1 86556 1m5yA 408 5.67e+01 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 1c7jA 489 5.75e+01 2bce c.69.1.1 34631 1tp4A 97 5.76e+01 a.189.1.1 107183 3kq0A 192 6.02e+01 1o6eA 235 6.05e+01 b.57.1.1 81083 3f52A 117 6.14e+01 3md3A 166 6.18e+01 2j5zA 221 6.18e+01 2azjA 289 6.22e+01 2nxqA 134 6.29e+01 3loyA 633 6.38e+01 2qiyA 154 6.43e+01 d.17.4.2 150815 3kheA 191 6.46e+01 1k99A 99 6.55e+01 a.21.1.1 68341 2d4yA 463 6.56e+01 3bkbA 377 6.57e+01 2xcbA 142 6.60e+01 1q1hA 110 6.66e+01 a.4.5.41 95580 3fycA 265 6.85e+01 1r5iD 216 6.85e+01 a.202.1.1 97091 2g5dA 422 7.10e+01 b.52.1.4 147083 1qe3A 489 7.17e+01 2bce c.69.1.1 34630 1f15B 218 7.24e+01 1f15B b.121.4.5 23321 1z08A 170 7.29e+01 c.37.1.8 124303 3k2yA 109 7.41e+01 2qcuA 501 7.45e+01 2bolA 314 7.47e+01 1vjeA 166 7.51e+01 d.185.1.2 100807 3js6A 355 7.52e+01 1yodA 30 7.59e+01 1g9lA 144 7.61e+01 1g9lA a.144.1.1 60399 2ntzA 192 7.65e+01 3k67A 159 7.69e+01 3a0jA 73 7.71e+01 1o26A 232 7.72e+01 d.207.1.1 86566 1m70A 190 7.76e+01 a.3.1.4,a.3.1.4 91200,91201 2zeqA 78 7.85e+01 d.15.1.1 154405 3pmgA 561 7.85e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 3lfkA 129 7.87e+01 3a7oA 75 7.91e+01 1xfrA 128 7.97e+01 1vkeA 133 7.99e+01 a.152.1.2 108650