# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m70A 190 1.05e+00 a.3.1.4,a.3.1.4 91200,91201 1ax8 146 1.39e+00 1ax8 1ax8A 146 1.39e+00 a.26.1.1 16844 2ko6A 89 1.56e+00 2o9pA 454 1.62e+00 2nsaA 170 1.71e+00 1fzdA 201 2.91e+00 3fib d.171.1.1 42484 2peqA 134 3.45e+00 a.280.1.1 149443 2boyA 254 4.17e+00 2jc7A 244 5.71e+00 3fv7A 244 5.89e+00 2pvpA 367 7.31e+00 2bjoA 136 7.49e+00 1pjaA 302 7.57e+00 c.69.1.13 94758 3g4pA 244 8.09e+00 2qzqA 152 8.54e+00 2j5zA 221 9.87e+00 1j31A 262 1.26e+01 d.160.1.2 90808 3cqcB 227 1.26e+01 2pn6A 150 1.29e+01 3hkxA 283 1.33e+01 1w9yA 319 1.44e+01 b.82.2.1 120801 3ckdA 312 1.50e+01 3k2yA 109 1.50e+01 2e7xA 150 1.56e+01 2qcuA 501 1.57e+01 3hhtB 229 1.59e+01 2jgdA 933 1.65e+01 1xo5A 183 1.71e+01 a.39.1.5 115680 3fmsA 209 1.74e+01 1whtB 153 1.77e+01 1whtB 1dx4A 586 1.79e+01 2bce c.69.1.1 34622 1whsB 153 1.83e+01 1whtB 1bcsB 160 1.86e+01 1whtB 3c1qA 123 1.91e+01 3kheA 191 1.96e+01 1dguA 183 1.98e+01 1dguA a.39.1.5 17333 3gr3A 230 2.02e+01 1uhnA 189 2.04e+01 a.39.1.5 99399 1awiA 138 2.08e+01 1pne d.110.1.1 40871 3hinA 275 2.14e+01 2pavP 139 2.14e+01 d.110.1.1 149350 3kusA 88 2.20e+01 2hs3A 603 2.20e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 2pbdP 139 2.22e+01 d.110.1.1 149354 3fncA 163 2.23e+01 2x04A 80 2.28e+01 2fk8A 318 2.29e+01 c.66.1.18 133648 1b66A 140 2.43e+01 1b66A d.96.1.2 40657 1k6kA 143 2.50e+01 a.174.1.1 77274 3fc7A 125 2.60e+01 1ta8A 332 2.63e+01 d.142.2.2 112375 1vk3A 615 2.67e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 3dm8A 143 2.76e+01 d.17.4.20 157804 3kylA 596 2.77e+01 2zfdA 226 2.84e+01 a.39.1.5 154406 3e38A 343 2.90e+01 2ia0A 171 3.01e+01 3a6pA 1204 3.01e+01 2d4gA 171 3.10e+01 1pne 140 3.13e+01 1pne 3lnoA 108 3.17e+01 2ciwA 299 3.17e+01 a.39.3.1,a.39.3.1 130502,130503 1cpo 299 3.17e+01 1cpo 1pneA 139 3.26e+01 d.110.1.1 40866 1wyjA 125 3.27e+01 1ugjA 141 3.28e+01 b.41.1.3 107826 1kpgA 287 3.40e+01 c.66.1.18 68735 2djkA 133 3.42e+01 c.47.1.2 131548 3du6A 596 3.45e+01 2ga8A 359 3.57e+01 1i9gA 280 3.61e+01 c.66.1.13 62090 3e1eA 141 3.62e+01 3ctvA 110 3.65e+01 3icvA 316 3.86e+01 2i4lA 458 3.97e+01 2nn6B 249 4.02e+01 d.14.1.4,d.101.1.1 148297,148298 1aj8A 371 4.24e+01 1aj8A a.103.1.1 18900 2gz4A 207 4.26e+01 a.211.1.1 147196 3eyxA 216 4.60e+01 3kdqA 154 4.93e+01 1zkeA 83 5.02e+01 a.30.6.1 125186 1oalA 151 5.10e+01 b.1.8.1 86739 3by6A 126 5.16e+01 1ubpB 122 5.19e+01 1ubpB b.85.3.1 28346 2extA 77 5.40e+01 b.82.5.1 132563 4ubpB 126 5.42e+01 1ubpB b.85.3.1 28345 2z7eA 157 5.46e+01 2dldA 337 5.46e+01 1dxy c.2.1.4,c.23.12.1 30099,31359 1gtfA 74 5.47e+01 b.82.5.1 70460 3hbrA 265 5.52e+01 3i04M 728 5.52e+01 3eu8A 430 5.52e+01 3emvA 253 5.57e+01 3bs3A 76 5.60e+01 1gxsB 158 5.71e+01 1mjgM 729 5.74e+01 e.26.1.3 79204 2d4yA 463 5.76e+01 1aocA 175 5.89e+01 1aocA g.17.1.5 44817 1yaiA 151 6.06e+01 1yaiA b.1.8.1 22289 2nnwA 376 6.09e+01 2o4cA 380 6.12e+01 3k28A 429 6.24e+01 3f8mA 248 6.36e+01 2ia2A 265 6.40e+01 1q0rA 298 6.42e+01 c.69.1.28 95508 1im5A 180 6.44e+01 c.33.1.3 66211 3l3sA 263 6.79e+01 1e3mA 800 6.84e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 1n9bA 265 6.87e+01 e.3.1.1 85463 1w0mA 226 7.14e+01 c.1.1.1 109027 3caxA 369 7.17e+01 1gyvA 120 7.21e+01 b.1.10.2 70790 2h5eA 529 7.22e+01 1go4E 100 7.22e+01 h.1.22.1 70296 3k0sA 799 7.31e+01 2o37A 92 7.39e+01 2azqA 311 7.39e+01 3loyA 633 7.40e+01 3h35A 185 7.41e+01 1j4aA 333 7.53e+01 c.2.1.4,c.23.12.1 71502,71503 3hemA 302 7.54e+01 1kutA 230 7.59e+01 d.143.1.1 73017 2wnpF 217 7.62e+01 3gnhA 403 7.64e+01 2h9aB 310 7.77e+01 3hn2A 312 7.78e+01 3fddA 533 7.80e+01 2a7bA 120 7.80e+01 b.1.10.2 126333 2p2sA 336 7.82e+01 1gywA 128 7.87e+01 b.1.10.2 70791 1s4uX 407 7.90e+01 b.69.4.1 112027 2v9yA 334 7.94e+01