%  SAM: /projects/compbio/experiments/protein-predict/SAM_T06/bin_freeze/sam/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
%  (c) 1992-2001 Regents of the University of California, Santa Cruz
%
%          Sequence Alignment and Modeling Software System
%         http://www.cse.ucsc.edu/research/compbio/sam.html
%
% ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
% R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
%  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
% K. Karplus, et al., What is the value added by human intervention in protein
%  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
% A. Krogh et al., Hidden Markov models in computational biology:
%  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
% ---------------------------------------------------------------------
%  T0581.t2k-100-30-bys   Host: bmecluster-0-0.local    Tue Jun  8 15:13:56 2010
%  farmer                 Dir:  /projects/compbiotmp/target06-query/target06-query-1276014752-7229
% ---------------------------------------------------------------------
% Inserted Files: 
% Database Files:  /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.byss
%

MODLIBMOD T0581.t2k-100-30-bys T0581.t2k-100-30-bys model number 1
% Calibration data for 24980 database sequences
% 8571 of 24980 scores > calibrate_threshold (0) used.
trackmod T0581.t2k.w0.5.mod,T0581.t2k.bys.mod
trackcoeff 1.0,0.3
alphabet protein,BYS
lambda 2.393263
tau 0.781766
sw 2
dpstyle 0
jumpinprob 1.000000
jumpoutprob 1.000000
subtractnull 4
FIMmethodscore -6
insertmethodscore 0
adjust_score 2
ENDMODLIBMOD