# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3kdqA 154 1.32e+00 3fc7A 125 2.16e+00 2ko6A 89 2.44e+00 2aplA 157 3.09e+00 a.258.1.1 127132 1vppV 102 3.19e+00 1vpfA g.17.1.1 44753 3jv1A 182 3.94e+00 1fzvA 132 4.25e+00 1vpfA g.17.1.1 60159 2gnnA 127 4.38e+00 3dm8A 143 4.53e+00 d.17.4.20 157804 1t7sA 137 5.06e+00 a.7.7.1 106636 2hxjA 144 5.59e+00 a.136.1.1 147432 2gm2A 132 8.66e+00 2x1wA 110 9.70e+00 2fr2A 172 1.15e+01 b.60.1.8 133963 1fltV 98 1.28e+01 1vpfA g.17.1.1 44751 2cttA 104 1.38e+01 3b42A 135 1.43e+01 1ui7A 638 1.54e+01 b.30.2.1,d.17.2.1,d.17.2.1 99413,99414,99415 2azeA 155 1.70e+01 e.63.1.1 127605 1konA 249 1.82e+01 e.39.1.1 72823 1iqyA 638 1.86e+01 b.30.2.1,d.17.2.1,d.17.2.1 76763,76764,76765 1ui8A 638 2.01e+01 b.30.2.1,d.17.2.1,d.17.2.1 99419,99420,99421 3ku3B 174 2.08e+01 1uddA 226 2.16e+01 a.132.1.3 107776 2p61A 162 2.24e+01 a.24.29.1 149266 2zl8A 638 2.33e+01 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 2d1wA 638 2.39e+01 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 1h6wA 312 2.40e+01 d.231.1.1,b.108.1.1 83059,83060 2idoB 83 2.51e+01 a.237.1.1 137285 2vv6A 119 2.53e+01 1w6gA 646 2.59e+01 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1necA 216 2.68e+01 1vfrA d.90.1.1 40249 3f52A 117 2.73e+01 3ks7A 397 2.79e+01 1rjoA 646 2.95e+01 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 1fwqA 123 2.99e+01 1fwqA b.88.1.1 28394 2a7lA 136 3.00e+01 d.20.1.1 126350 2qvjA 421 3.13e+01 3movA 95 3.15e+01 1hn6A 110 3.22e+01 g.61.1.1 76721 3hahA 325 3.27e+01 3hhwK 421 3.34e+01 2pviA 157 3.64e+01 3pviA c.52.1.6 33302 3kvpA 72 3.67e+01 1f0yA 302 3.73e+01 2hdhA a.100.1.3,c.2.1.6 18793,30197 2wkbA 125 3.81e+01 1wleA 501 3.85e+01 2hdhA 293 3.86e+01 2hdhA a.100.1.3,c.2.1.6 18795,30199 1eexG 173 3.88e+01 1dioG a.23.2.1 16490 2gicA 422 3.95e+01 a.260.1.1 135227 3huiA 126 3.98e+01 2x3vA 337 4.11e+01 1kpeA 126 4.12e+01 1kpf d.13.1.1 37508 1kpf 126 4.14e+01 1kpf 1jsmB 176 4.16e+01 h.3.1.1 63265 1kpfA 125 4.21e+01 d.13.1.1 37507 2a4nA 182 4.40e+01 d.108.1.1 126159 3gfzA 413 4.42e+01 2dlbA 80 4.55e+01 b.174.1.1 146541 2extA 77 4.55e+01 b.82.5.1 132563 3m6sB 181 4.68e+01 1wibA 92 4.70e+01 d.47.1.1 114665 1aquA 297 4.88e+01 1aquA c.37.1.5 31942 1l8rA 101 4.89e+01 a.6.1.4 73700 1g0u1 266 4.91e+01 2jttC 35 4.95e+01 1zq1C 633 4.96e+01 a.182.1.2,d.74.4.1,d.128.1.5 125493,125494,125495 3hhtB 229 5.01e+01 3haiA 308 5.14e+01 3h0gI 113 5.21e+01 2euiA 153 5.22e+01 d.108.1.1 132387 3bj6A 152 5.23e+01 3d5lA 221 5.23e+01 1hy3A 294 5.25e+01 c.37.1.5 71090 3gwhA 111 5.33e+01 3k26A 366 5.37e+01 3iiwA 365 5.43e+01 3c9gA 142 5.50e+01 1zvdA 380 5.68e+01 1xo5A 183 5.77e+01 a.39.1.5 115680 1qbeA 132 5.78e+01 1qbeA d.85.1.1 40138 1z3xA 238 5.83e+01 a.118.1.22,a.261.1.1 124416,124417 2gviA 204 5.85e+01 d.81.3.1,g.39.1.18 147187,147188 2ivfB 352 5.86e+01 2k7rA 106 5.88e+01 1drmA 131 5.97e+01 1drmA d.110.3.2 40908 2zihA 347 6.08e+01 3hadA 308 6.11e+01 2hdhA a.100.1.3,c.2.1.6 18799,30203 3cklA 298 6.27e+01 1lswA 131 6.31e+01 d.110.3.2 78181 2rhkC 72 6.43e+01 1dp7P 76 6.55e+01 1dp7P a.4.5.20 16159 1neeA 138 6.57e+01 d.241.1.1,g.59.1.1 91841,91842 1wspA 84 6.65e+01 d.15.1.8 145834 1drw 273 6.67e+01 1drw 1drwA 273 6.67e+01 c.2.1.3,d.81.1.3 30057,39972 1jeqA 609 6.78e+01 1jeqA a.140.2.1,b.131.1.1,c.62.1.3 64748,90366,90367 1nuiA 255 6.87e+01 e.13.1.2,g.41.3.2 86194,86195 2v31A 112 6.88e+01 1gtfA 74 6.93e+01 b.82.5.1 70460 1jpyA 137 6.97e+01 g.17.1.6 67065 3ijpA 288 7.00e+01 3fwcB 85 7.01e+01 1i3zA 103 7.05e+01 d.93.1.1 83667 1xj4A 119 7.07e+01 d.110.3.2 122027 1pk6A 133 7.08e+01 b.22.1.1 94801 1hxrA 115 7.15e+01 1fwqA b.88.1.1 28392 2e74B 160 7.26e+01 f.32.1.1 145111 3h02A 288 7.46e+01 2o37A 92 7.47e+01 1f16A 192 7.47e+01 1f16A f.1.4.1 43400 1yrlA 491 7.48e+01 2k2oA 123 7.96e+01