# List of top-scoring protein chains for T0581.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1n71A 180 2.86e+00 d.108.1.1 85370 2a4nA 182 2.86e+00 d.108.1.1 126159 1b87A 181 2.86e+00 1b87A d.108.1.1 40797 3huiA 126 4.05e+00 2zk7A 257 6.86e+00 2dtxA 264 7.14e+00 2gm2A 132 7.36e+00 3fc7A 125 7.99e+00 1pydA 556 8.85e+00 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2vk1A 563 9.08e+00 2w93A 563 9.24e+00 1pvdA 555 9.24e+00 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1rw4A 272 9.33e+00 c.37.1.10 97962 2c8vA 288 9.54e+00 c.37.1.10 130128 1g20E 289 9.55e+00 1cp2A c.37.1.10 32247 1de0A 289 1.34e+01 1cp2A c.37.1.10 32255 1xd8A 289 1.41e+01 1qpbA 563 1.42e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2afhE 289 1.43e+01 c.37.1.10 126683 2vk8A 563 1.46e+01 2ko6A 89 1.52e+01 1rtzA 152 1.59e+01 d.58.30.1 97831 3loyA 633 1.70e+01 1kpeB 125 1.75e+01 1kpf d.13.1.1 37509 1kpfA 126 1.79e+01 d.13.1.1 37507 1n62A 166 2.01e+01 a.56.1.1,d.15.4.2 80090,80091 1xdbA 289 2.01e+01 1qvzA 237 2.05e+01 c.23.16.2 96453 1g63A 181 2.11e+01 1g5qA c.34.1.1 60299 2vk4A 563 2.21e+01 1qvvA 237 2.26e+01 c.23.16.2 96442 1m70A 190 2.30e+01 a.3.1.4,a.3.1.4 91200,91201 1rw7A 243 2.30e+01 c.23.16.2 97963 2dlsA 93 2.33e+01 1dgmA 363 2.59e+01 1bx4A c.72.1.1 34936 1lioA 363 2.63e+01 c.72.1.1 73924 1tu7A 208 2.64e+01 a.45.1.1,c.47.1.5 112653,112654 1liiA 363 2.66e+01 c.72.1.1 73921 2absA 383 2.68e+01 c.72.1.1 126534 3pmgA 561 2.99e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 3dm8A 143 3.20e+01 d.17.4.20 157804 2yw6A 183 3.41e+01 a.25.1.1 153794 3ec8A 166 3.46e+01 1hmlA 142 3.58e+01 d.2.1.2 36598 3kwsA 287 3.76e+01 2g6pA 304 3.77e+01 3lk5A 380 3.85e+01 2b3hA 329 4.20e+01 3ismC 359 4.23e+01 3icoA 268 4.32e+01 1zcjA 463 4.36e+01 3jv1A 182 4.38e+01 1dnpA 471 4.57e+01 1qnf a.99.1.1,c.28.1.1 18775,31630 3libA 290 4.91e+01 1lpbB 449 5.00e+01 1gpl b.12.1.2,c.69.1.19 23643,34791 3bfxA 296 5.36e+01 c.37.1.5 155239 2gm8A 221 5.55e+01 a.132.1.3 135368 3dxqA 301 5.58e+01 2jpeA 140 5.75e+01 3iieA 401 5.76e+01 1upfA 224 5.85e+01 1bd3A c.61.1.1 34102 1v06A 142 5.96e+01 2x58A 727 6.07e+01 2qzaA 618 6.19e+01 2qyuA 627 6.19e+01 2jpcA 61 6.35e+01 2k2oA 123 6.48e+01 2qnkA 286 6.50e+01 1uddA 226 6.53e+01 a.132.1.3 107776 1bd3A 243 6.59e+01 1bd3A c.61.1.1 34098 1r5mA 425 6.81e+01 1ethA 448 6.93e+01 1gpl b.12.1.2,c.69.1.19 23641,34789 2wiiC 277 7.11e+01 2dfvA 347 7.24e+01 1yvmA 264 7.27e+01 d.127.1.1 124105 3matA 265 7.29e+01 1c24A d.127.1.1 41149 2d8aA 348 7.29e+01 1c24A 263 7.33e+01 1c24A d.127.1.1 41148 4matA 278 7.42e+01 1c24A d.127.1.1 41150 1xnzA 264 7.53e+01 d.127.1.1 115673 2p9aA 262 7.58e+01 d.127.1.1 149332 2p99A 261 7.58e+01 d.127.1.1 149331 2gu5A 263 7.58e+01 d.127.1.1 135723 2ggcA 263 7.59e+01 d.127.1.1 135127 1kcyA 75 7.65e+01 a.39.1.1 68450 2gtxA 261 7.65e+01 d.127.1.1 135711 1wtaA 275 7.78e+01