# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ko6A 89 1.33e+00 3bhwA 209 1.42e+00 1xo5A 183 2.84e+00 a.39.1.5 115680 3f8mA 248 4.33e+00 3lfkA 129 5.71e+00 1l8rA 101 6.53e+00 a.6.1.4 73700 1ehwA 162 6.92e+00 1npk d.58.6.1 39088 2boyA 254 7.75e+00 2vg2A 284 8.13e+00 3fc7A 125 9.81e+00 1fzdA 201 1.12e+01 3fib d.171.1.1 42484 1vl5A 260 1.26e+01 c.66.1.41 108720 1pvdA 537 1.29e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 3fmsA 209 1.30e+01 2yzuA 109 1.36e+01 2cvkA 110 1.38e+01 3k2yA 109 1.58e+01 1pjcA 361 1.58e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 2rfrA 155 1.65e+01 d.17.4.28 152000 2vesA 299 1.73e+01 2nxqA 134 1.75e+01 1pjaA 302 1.79e+01 c.69.1.13 94758 2d4gA 171 1.84e+01 1uhnA 189 1.87e+01 a.39.1.5 99399 2hxjA 144 1.97e+01 a.136.1.1 147432 2vk8A 563 1.98e+01 1t0bA 252 2.05e+01 c.23.16.6 106199 3hhyA 280 2.08e+01 2qzqA 152 2.10e+01 3fo3A 525 2.11e+01 3gbxA 420 2.17e+01 1dfoA 417 2.30e+01 1bj4A c.67.1.4 34480 3d0sA 227 2.31e+01 1m70A 190 2.43e+01 a.3.1.4,a.3.1.4 91200,91201 3fncA 163 2.53e+01 1m5yA 408 2.61e+01 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 2peqA 134 2.65e+01 a.280.1.1 149443 1wudA 89 2.67e+01 a.60.8.1 121283 1i7dA 659 3.05e+01 1d6mA e.10.1.1 61886 3kdqA 154 3.18e+01 1tqmA 282 3.30e+01 a.4.5.56,d.144.1.9 107236,107237 3hhtB 229 3.35e+01 3cg1A 296 3.37e+01 3c1qA 123 3.54e+01 1ta8A 332 3.54e+01 d.142.2.2 112375 2gf4A 100 3.55e+01 a.8.10.1 135074 2cb0A 333 3.94e+01 2zeqA 78 3.97e+01 d.15.1.1 154405 2ot4A 525 3.99e+01 2vg3A 284 4.01e+01 3c7mA 195 4.03e+01 1uddA 226 4.07e+01 a.132.1.3 107776 3huiA 126 4.10e+01 2jc4A 256 4.19e+01 2o4cA 380 4.27e+01 2j5zA 221 4.29e+01 3eu8A 430 4.34e+01 1vq2A 193 4.38e+01 c.97.1.2 114004 1v5dA 386 4.47e+01 a.102.1.2 113537 1kpfA 125 4.52e+01 d.13.1.1 37507 3dm8A 143 4.54e+01 d.17.4.20 157804 1kpf 126 4.56e+01 1kpf 2jafA 274 4.65e+01 1tjoA 182 4.76e+01 a.25.1.1 112461 2d74B 148 4.78e+01 3k8pD 709 4.97e+01 2eh6A 375 5.02e+01 1txdA 385 5.15e+01 a.87.1.1,b.55.1.1 107422,107423 3lwsA 357 5.20e+01 1c96A 753 5.27e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1kpeA 126 5.48e+01 1kpf d.13.1.1 37508 2epjA 434 5.52e+01 3lcpC 93 5.60e+01 3kheA 191 5.68e+01 3gl3A 152 5.83e+01 3hznA 220 5.85e+01 2r6oA 294 6.00e+01 2fk8A 318 6.00e+01 c.66.1.18 133648 3deeA 249 6.06e+01 3hemA 302 6.09e+01 1zarA 282 6.16e+01 a.4.5.56,d.144.1.9 124843,124844 1dymA 402 6.25e+01 1celA b.29.1.10 24304 2djkA 133 6.26e+01 c.47.1.2 131548 1ojjA 402 6.27e+01 b.29.1.10 93130 2i4lA 458 6.35e+01 1omiA 248 6.36e+01 b.82.3.3,a.4.5.4 87079,87080 2hurA 142 6.36e+01 2qytA 317 6.39e+01 1n7kA 234 6.40e+01 c.1.10.1 85374 1pmnA 364 6.43e+01 d.144.1.7 94907 3l09A 266 6.73e+01 2pvpA 367 6.76e+01 3hinA 275 6.78e+01 2q4vA 170 6.81e+01 d.108.1.1 139878 2b1pA 355 6.82e+01 d.144.1.7 127672 1jr7A 311 6.83e+01 b.82.2.3 63255 2zdtA 364 6.83e+01 d.144.1.7 154400 1hw6A 278 6.85e+01 1frb c.1.7.1 61296 2g4rA 160 6.98e+01 1im5A 180 7.02e+01 c.33.1.3 66211 2o0uA 364 7.17e+01 d.144.1.7 138868 3mi6A 745 7.18e+01 1i9gA 280 7.22e+01 c.66.1.13 62090 3mag 307 7.28e+01 3mag 2jhmF 218 7.30e+01 2d39A 237 7.31e+01 1qsaA 618 7.47e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 3bjkA 153 7.52e+01 3lnoA 108 7.53e+01 3ej9B 70 7.57e+01 1zy4A 303 7.58e+01 1x7vA 99 7.78e+01 d.58.4.11 109501 1aocA 175 7.88e+01 1aocA g.17.1.5 44817 3gyyA 341 7.95e+01 3e4rA 324 7.95e+01 2bkrA 212 7.98e+01 d.3.1.7 128710