# List of top-scoring protein chains for t04-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lfkA 129 5.61e-01 1l8rA 101 9.23e-01 a.6.1.4 73700 1m70A 190 1.23e+00 a.3.1.4,a.3.1.4 91200,91201 1fzdA 201 1.79e+00 3fib d.171.1.1 42484 2qzqA 152 2.28e+00 3fmsA 209 2.40e+00 2boyA 254 3.13e+00 2ko6A 89 3.36e+00 1w9yA 319 4.44e+00 b.82.2.1 120801 3fncA 163 5.02e+00 1sq9A 397 5.67e+00 b.69.4.1 105889 3huiA 126 5.86e+00 3fc7A 125 6.04e+00 1i7dA 659 6.12e+00 1d6mA e.10.1.1 61886 1i9gA 280 6.39e+00 c.66.1.13 62090 1kpgA 287 6.49e+00 c.66.1.18 68735 3f8mA 248 6.51e+00 3hemA 302 6.63e+00 1ehwA 162 7.44e+00 1npk d.58.6.1 39088 2fk8A 318 9.33e+00 c.66.1.18 133648 1s4uX 407 9.52e+00 b.69.4.1 112027 3k2yA 109 9.52e+00 2glwA 92 9.97e+00 2pvpA 367 1.02e+01 2d4gA 171 1.08e+01 2j5zA 221 1.09e+01 2wnpF 217 1.10e+01 2ia0A 171 1.15e+01 1go4E 100 1.17e+01 h.1.22.1 70296 2d39A 237 1.24e+01 2jhmF 218 1.25e+01 1lq9A 112 1.29e+01 d.58.4.3 78129 2z7eA 157 1.37e+01 2peqA 134 1.40e+01 a.280.1.1 149443 3bhwA 209 1.45e+01 3c1qA 123 1.47e+01 2cfxA 144 1.53e+01 a.4.5.32,d.58.4.2 130395,130396 1uhnA 189 1.62e+01 a.39.1.5 99399 1xo5A 183 1.70e+01 a.39.1.5 115680 4ubpB 126 1.71e+01 1ubpB b.85.3.1 28345 3cg1A 296 1.84e+01 2g4rA 160 1.85e+01 2hxjA 144 1.91e+01 a.136.1.1 147432 1i0aA 466 1.91e+01 1auwA a.127.1.1 61479 1vl5A 260 1.93e+01 c.66.1.41 108720 3eu8A 430 1.95e+01 1ax8 146 2.00e+01 1ax8 1ax8A 146 2.00e+01 a.26.1.1 16844 1txdA 385 2.00e+01 a.87.1.1,b.55.1.1 107422,107423 2pn6A 150 2.02e+01 2o37A 92 2.02e+01 3e38A 343 2.04e+01 2hurA 142 2.06e+01 3l9vA 189 2.15e+01 1a9xB 379 2.15e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 3aazB 229 2.21e+01 3cqbA 107 2.27e+01 3hhtB 229 2.33e+01 1yycA 174 2.47e+01 2e7xA 150 2.50e+01 2djkA 133 2.59e+01 c.47.1.2 131548 1pjaA 302 2.68e+01 c.69.1.13 94758 2i49A 429 2.77e+01 3icvA 316 2.80e+01 3l09A 266 2.86e+01 2bjoA 136 3.06e+01 1lswA 131 3.09e+01 d.110.3.2 78181 2gf4A 100 3.11e+01 a.8.10.1 135074 2yzuA 109 3.15e+01 2rfrA 155 3.17e+01 d.17.4.28 152000 2vifA 141 3.22e+01 3by6A 126 3.24e+01 3d01A 165 3.24e+01 3hhyA 280 3.25e+01 1b66A 140 3.28e+01 1b66A d.96.1.2 40657 1wspA 84 3.30e+01 d.15.1.8 145834 3fddA 533 3.33e+01 2d74B 148 3.33e+01 2bolA 314 3.33e+01 2vv6A 119 3.35e+01 2pbdP 139 3.42e+01 d.110.1.1 149354 2zfdA 226 3.43e+01 a.39.1.5 154406 1oalA 151 3.43e+01 b.1.8.1 86739 2cvkA 110 3.51e+01 1r5mA 425 3.51e+01 1x7vA 99 3.52e+01 d.58.4.11 109501 1yhuB 144 3.56e+01 1t64A 377 3.57e+01 c.42.1.2 106543 1xj4A 119 3.67e+01 d.110.3.2 122027 3h35A 185 3.71e+01 1keaA 221 3.71e+01 a.96.1.2 68491 3bjnA 165 3.73e+01 1q48A 134 3.77e+01 d.224.1.2 95783 1y0hA 105 3.77e+01 d.58.4.11 116303 1w0mA 226 3.84e+01 c.1.1.1 109027 1k1xA 659 3.84e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1vdhA 249 3.89e+01 d.58.4.10 108523 1yaiA 151 4.15e+01 1yaiA b.1.8.1 22289 2gykB 134 4.21e+01 d.4.1.1 135857 2eh6A 375 4.27e+01 3hbrA 265 4.28e+01 3k8pD 709 4.33e+01 3g0kA 148 4.35e+01 1nbuC 119 4.35e+01 d.96.1.3 91769 3lnoA 108 4.37e+01 1v9sA 208 4.39e+01 c.61.1.1 119894 1nbuB 119 4.40e+01 d.96.1.3 91768 3gl5A 239 4.48e+01 1qf8A 182 4.51e+01 1qf8A g.41.4.1 45212 3e0dA 1220 4.61e+01 1wyjA 125 4.69e+01 3cc8A 230 4.73e+01 2gm2A 132 4.81e+01 1m5yA 408 4.82e+01 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 3a6pA 1204 4.84e+01 1bob 320 4.85e+01 1bob 1bobA 320 4.85e+01 d.108.1.1 40816 3dhrA 142 4.86e+01 3e9hA 493 4.88e+01 2zy5A 546 4.89e+01 2k4vA 125 4.95e+01 2b0lA 102 4.96e+01 a.4.5.66 127641 1ta8A 332 4.99e+01 d.142.2.2 112375 2r80A 141 4.99e+01 3lcpC 93 5.02e+01 2zeqA 78 5.05e+01 d.15.1.1 154405 2c2aA 258 5.06e+01 a.30.2.1,d.122.1.3 129662,129663 2hczX 245 5.08e+01 1ztuA 341 5.12e+01 d.110.2.1,d.110.3.9 146024,146025 3eedA 193 5.21e+01 g.41.4.1 158121 2dd7A 216 5.23e+01 2gy9D 204 5.27e+01 d.66.1.2 145233 3c26A 266 5.29e+01 3dm8A 143 5.35e+01 d.17.4.20 157804 1eb7A 323 5.38e+01 1eb7A a.3.1.5,a.3.1.5 59404,59405 1u6mA 199 5.39e+01 d.108.1.1 113069 3fm5A 150 5.41e+01 3deeA 249 5.41e+01 1q0rA 298 5.46e+01 c.69.1.28 95508 1um5L 219 5.47e+01 b.1.1.1,b.1.1.2 113304,113305 1hxvA 113 5.48e+01 d.26.1.1 71089 1ugjA 141 5.53e+01 b.41.1.3 107826 1tca 317 5.53e+01 1tca 1tcaA 317 5.53e+01 c.69.1.17 34726 1pne 140 5.54e+01 1pne 2azqA 311 5.60e+01 3icxA 255 5.63e+01 1emvB 134 5.64e+01 1bxiB d.4.1.1 37135 3fo3A 525 5.66e+01 1nlfA 279 5.73e+01 c.37.1.11 85850 2o9cA 342 5.81e+01 d.110.2.1,d.110.3.9 148684,148685 3bw6A 144 5.87e+01 2ixtA 310 5.87e+01 c.41.1.1 147828 1zkeA 83 5.88e+01 a.30.6.1 125186 1pneA 139 5.89e+01 d.110.1.1 40866 3dtdA 175 5.90e+01 3k67A 159 5.96e+01 1sy7A 715 6.04e+01 c.23.16.3 112161 2vlqB 134 6.07e+01 1so2A 420 6.09e+01 a.211.1.2 98936 2qytA 317 6.10e+01 1vqoM 195 6.13e+01 d.12.1.2 120374 1aj8A 371 6.15e+01 1aj8A a.103.1.1 18900 1svdA 473 6.17e+01 c.1.14.1,d.58.9.1 119057,119058 2nn6B 249 6.22e+01 d.14.1.4,d.101.1.1 148297,148298 1o0pA 104 6.39e+01 d.58.7.1 86535 1fr2B 134 6.40e+01 d.4.1.1 83257 1dfoA 417 6.43e+01 1bj4A c.67.1.4 34480 1uddA 226 6.47e+01 a.132.1.3 107776 2cb0A 333 6.47e+01 1ymtA 246 6.51e+01 3e4rA 324 6.51e+01 2q9fA 456 6.55e+01 3eerA 148 6.57e+01 1tjoA 182 6.58e+01 a.25.1.1 112461 3id5A 388 6.58e+01 3eetA 274 6.61e+01 2ot4A 525 6.64e+01 3cqcB 227 6.68e+01 3hinA 275 6.70e+01 2wkbA 125 6.75e+01 2jrbA 88 6.85e+01 2fyfA 398 6.86e+01 1zy4A 303 6.88e+01 2fcaA 213 6.89e+01 c.66.1.53 133262 1svjA 156 6.90e+01 d.220.1.1 106049 1xwrA 97 6.98e+01 a.35.1.9 122406 2b3nA 159 7.01e+01 d.38.1.4 127792 3ctdA 213 7.07e+01 a.80.1.2 156981 3hvzA 78 7.08e+01 3lwsA 357 7.12e+01 3kxeA 110 7.12e+01 1rhxA 87 7.14e+01 c.114.1.2 111805 3gbxA 420 7.16e+01 2kl8A 85 7.18e+01 1zm8A 259 7.24e+01 3d3zA 247 7.26e+01 3bvsA 239 7.29e+01 1k6kA 143 7.31e+01 a.174.1.1 77274 2c5rA 67 7.40e+01 a.251.1.1 129944 3idgA 214 7.42e+01 2wnhA 418 7.56e+01 3bkzA 201 7.58e+01 2cyyA 151 7.64e+01 a.4.5.32,d.58.4.2 131028,131029 2g5dA 422 7.65e+01 b.52.1.4 147083 1kxlA 199 7.69e+01 b.40.4.3 73155 3c6fA 153 7.77e+01 2j85A 122 7.79e+01 d.321.1.1 138133 3kdqA 154 7.82e+01 2whpB 548 7.88e+01 3c7mA 195 7.96e+01 2pavP 139 7.97e+01 d.110.1.1 149350 1yqyA 523 7.99e+01 d.92.1.14,d.166.1.1 123903,123904