# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ko6A 89 1.04e+00 1xo5A 183 1.07e+00 a.39.1.5 115680 2oyyA 76 1.70e+00 2p0vA 489 1.73e+00 a.102.1.8 149142 3huiA 126 1.74e+00 3f27D 83 1.77e+00 3kdqA 154 3.20e+00 3e4wA 320 3.31e+00 2eulA 156 3.67e+00 a.2.1.1,d.26.1.2 132392,132393 2o37A 92 4.06e+00 1n62A 166 4.47e+00 a.56.1.1,d.15.4.2 80090,80091 3jv1A 182 4.62e+00 3c1qA 123 4.67e+00 3eucA 367 5.22e+00 2gm2A 132 5.44e+00 2c5rA 67 6.30e+00 a.251.1.1 129944 3lcpC 93 6.93e+00 1qx2A 76 7.15e+00 a.39.1.1 104622 3dxqA 301 7.93e+00 1wudA 89 9.08e+00 a.60.8.1 121283 1dnpA 471 9.08e+00 1qnf a.99.1.1,c.28.1.1 18775,31630 3hhtB 229 9.26e+00 1fzdA 201 9.48e+00 3fib d.171.1.1 42484 1bazA 53 1.02e+01 1bazA a.43.1.1 17421 2z7eA 157 1.03e+01 3a4uB 143 1.07e+01 3ej9B 70 1.08e+01 1ryp2 233 1.08e+01 1ryp2 2d4gA 171 1.11e+01 3dm8A 143 1.14e+01 d.17.4.20 157804 1kpeA 126 1.21e+01 1kpf d.13.1.1 37508 3hadA 308 1.25e+01 2hdhA a.100.1.3,c.2.1.6 18799,30203 1mtpA 323 1.26e+01 e.1.1.1 85107 2f23A 156 1.26e+01 a.2.1.1,d.26.1.2 132797,132798 3cklA 298 1.28e+01 3bj6A 152 1.29e+01 1kpfA 125 1.46e+01 d.13.1.1 37507 2vogB 27 1.52e+01 2wkbA 125 1.59e+01 1b4fA 82 1.63e+01 1b4fA a.60.1.2 17934 1m5yA 408 1.71e+01 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 2ordA 397 1.71e+01 1kpf 126 1.71e+01 1kpf 1jsuC 84 1.71e+01 1jsuC j.55.1.1 46339 1l8rA 101 1.72e+01 a.6.1.4 73700 1x93A 55 1.78e+01 a.43.1.3 145859 3hinA 275 1.96e+01 2vzfA 197 1.99e+01 3ctdA 213 2.06e+01 a.80.1.2 156981 1uhnA 189 2.07e+01 a.39.1.5 99399 1wmuA 141 2.08e+01 a.1.1.2 109416 2hinA 71 2.10e+01 2waxA 193 2.16e+01 2oo2A 86 2.16e+01 a.8.11.1 148917 3d5lA 221 2.18e+01 3g0kA 148 2.26e+01 1a6q 382 2.30e+01 1a6q 1a6qA 382 2.30e+01 a.159.1.1,d.219.1.1 75801,75802 2jttC 35 2.35e+01 2hq9A 149 2.42e+01 b.45.1.1 136659 1keaA 221 2.47e+01 a.96.1.2 68491 3bx6A 192 2.47e+01 2jhmF 218 2.61e+01 2wnpF 217 2.62e+01 3doeB 165 2.63e+01 3ffdP 108 2.70e+01 2zfdA 226 2.72e+01 a.39.1.5 154406 2d39A 237 2.74e+01 2wojA 354 2.80e+01 1wspA 84 2.82e+01 d.15.1.8 145834 1uhkA 191 2.83e+01 a.39.1.5 119681 1dunA 134 2.83e+01 b.85.4.1 28371 2uuzA 99 2.84e+01 3hvzA 78 2.89e+01 2kelA 56 2.91e+01 1zjrA 211 3.15e+01 1kw4A 89 3.17e+01 a.60.1.2 73077 1rypA 243 3.19e+01 1pmaA d.153.1.4 41932 1pk6A 133 3.24e+01 b.22.1.1 94801 1g0uG 252 3.37e+01 d.153.1.4 41952 1r5mA 425 3.52e+01 1ig5A 75 3.57e+01 4icb a.39.1.1 62363 3ismC 359 3.72e+01 2gf4A 100 3.75e+01 a.8.10.1 135074 1p9yA 121 3.78e+01 d.241.2.1 94402 1s0yB 71 3.88e+01 d.80.1.1 98315 2q24A 194 3.91e+01 1f0yA 302 3.93e+01 2hdhA a.100.1.3,c.2.1.6 18793,30197 3iiwA 365 4.02e+01 1zemA 262 4.05e+01 c.2.1.2 124984 2cobA 70 4.17e+01 a.4.1.15 130673 3icxA 255 4.19e+01 1g71A 347 4.19e+01 1g71A d.264.1.1 43268 1v33A 366 4.29e+01 d.264.1.1 100278 3f52A 117 4.30e+01 2qjlA 99 4.31e+01 1hxvA 113 4.35e+01 d.26.1.1 71089 2fr2A 172 4.37e+01 b.60.1.8 133963 1t3qA 168 4.38e+01 a.56.1.1,d.15.4.2 106367,106368 3kq0A 192 4.50e+01 3k26A 366 4.59e+01 1f0xA 571 4.63e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 2icwG 213 4.65e+01 a.202.1.1 137251 1tfeA 145 4.67e+01 d.43.1.1 38680 1tfe 145 4.67e+01 1tfe 2p61A 162 4.69e+01 a.24.29.1 149266 1o20A 427 4.71e+01 c.82.1.1 86556 2azjA 289 4.71e+01 1q1hA 110 4.75e+01 a.4.5.41 95580 3h7xA 64 4.77e+01 3mmiA 386 4.80e+01 3h7zA 61 4.80e+01 3kheA 191 4.82e+01 1tp4A 97 4.88e+01 a.189.1.1 107183 3cqcB 227 4.89e+01 2bk9A 153 4.97e+01 1rm6C 161 5.01e+01 a.56.1.1,d.15.4.2 111876,111877 3fycA 265 5.07e+01 3js6A 355 5.10e+01 3fc7A 125 5.10e+01 2qzqA 152 5.16e+01 2f6mA 65 5.24e+01 a.2.17.1 133051 1i3zA 103 5.25e+01 d.93.1.1 83667 2nl9B 26 5.28e+01 2ixeA 271 5.44e+01 1kalA 29 5.62e+01 g.3.3.1 44077 2vsoE 289 5.69e+01 2d4yA 463 5.82e+01 2qywA 102 5.86e+01 1pq1B 33 5.87e+01 2rpaA 78 5.94e+01 1z3xA 238 5.98e+01 a.118.1.22,a.261.1.1 124416,124417 1r5iD 216 6.22e+01 a.202.1.1 97091 1k99A 99 6.23e+01 a.21.1.1 68341 3aeiA 99 6.24e+01 2c5uA 375 6.26e+01 3a0jA 73 6.31e+01 2qiyA 154 6.32e+01 d.17.4.2 150815 2j5zA 221 6.33e+01 2nxqA 134 6.35e+01 3k2yA 109 6.38e+01 1y8aA 332 6.41e+01 c.108.1.24 145913 3md3A 166 6.57e+01 1mhyG 169 6.60e+01 1mtyG a.23.3.1 16518 2xcbA 142 6.62e+01 1qe3A 489 6.91e+01 2bce c.69.1.1 34630 3loyA 633 6.91e+01 3k67A 159 7.09e+01 1vjeA 166 7.13e+01 d.185.1.2 100807 1xfrA 128 7.15e+01 1yaiA 151 7.22e+01 1yaiA b.1.8.1 22289 3gjuA 460 7.25e+01 1lvwA 295 7.36e+01 c.68.1.6 84723 2zeqA 78 7.38e+01 d.15.1.1 154405 3hr0A 263 7.49e+01 2rkqA 169 7.55e+01 2g5dA 422 7.57e+01 b.52.1.4 147083 3fmsA 209 7.63e+01 3pmgA 561 7.64e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 3dnzA 316 7.67e+01 3bkbA 377 7.89e+01 1konA 249 7.90e+01 e.39.1.1 72823 2qcuA 501 7.96e+01