# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lfkA 129 2.35e+00 1m70A 190 3.86e+00 a.3.1.4,a.3.1.4 91200,91201 1i7dA 659 4.27e+00 1d6mA e.10.1.1 61886 2qzqA 152 4.82e+00 3fmsA 209 5.12e+00 1fzdA 201 5.46e+00 3fib d.171.1.1 42484 3fncA 163 5.74e+00 2ko6A 89 6.02e+00 1l8rA 101 6.31e+00 a.6.1.4 73700 2wnpF 217 6.79e+00 2gm2A 132 6.93e+00 2yzuA 109 8.09e+00 2jhmF 218 8.29e+00 2peqA 134 8.64e+00 a.280.1.1 149443 3huiA 126 9.25e+00 3fc7A 125 9.74e+00 2d39A 237 1.01e+01 2cvkA 110 1.06e+01 3cg1A 296 1.07e+01 3f8mA 248 1.12e+01 1i9gA 280 1.20e+01 c.66.1.13 62090 3bhwA 209 1.27e+01 2boyA 254 1.36e+01 1xo5A 183 1.47e+01 a.39.1.5 115680 1qwtA 255 1.54e+01 b.26.1.3 96501 2d4gA 171 2.15e+01 2j5zA 221 2.16e+01 2a4nA 182 2.17e+01 d.108.1.1 126159 1pjaA 302 2.28e+01 c.69.1.13 94758 2o9pA 454 2.34e+01 1pvdA 537 2.41e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 3deeA 249 2.44e+01 1ta8A 332 2.79e+01 d.142.2.2 112375 3lnoA 108 2.85e+01 1wspA 84 3.14e+01 d.15.1.8 145834 2hxjA 144 3.19e+01 a.136.1.1 147432 2depA 356 3.32e+01 1n71A 180 3.49e+01 d.108.1.1 85370 1b87A 181 3.49e+01 1b87A d.108.1.1 40797 3bh7B 352 3.61e+01 3dm8A 143 3.62e+01 d.17.4.20 157804 1ehwA 162 3.68e+01 1npk d.58.6.1 39088 2g4rA 160 3.80e+01 1x7vA 99 3.81e+01 d.58.4.11 109501 1ztuA 341 4.08e+01 d.110.2.1,d.110.3.9 146024,146025 1j27A 102 4.13e+01 d.58.50.1 90778 1b66A 140 4.23e+01 1b66A d.96.1.2 40657 1go4E 100 4.23e+01 h.1.22.1 70296 1hxvA 113 4.38e+01 d.26.1.1 71089 2i2xA 461 4.49e+01 2wkbA 125 4.53e+01 2o9cA 342 4.63e+01 d.110.2.1,d.110.3.9 148684,148685 3cg3A 320 4.65e+01 2pvpA 367 4.69e+01 3c1qA 123 4.72e+01 2o37A 92 4.79e+01 3hemA 302 4.80e+01 3hhtB 229 4.82e+01 1uhnA 189 4.87e+01 a.39.1.5 99399 3k2yA 109 4.98e+01 2ewfA 610 5.24e+01 1txdA 385 5.24e+01 a.87.1.1,b.55.1.1 107422,107423 1twdA 256 5.33e+01 c.1.30.1 107397 3hbrA 265 5.58e+01 1r5mA 425 5.61e+01 2rfrA 155 5.75e+01 d.17.4.28 152000 2x04A 80 5.75e+01 2hurA 142 5.78e+01 3bvsA 239 6.06e+01 2yx1A 336 6.07e+01 2fk8A 318 6.14e+01 c.66.1.18 133648 2bpsA 81 6.17e+01 2dtxA 264 6.24e+01 2gf4A 100 6.27e+01 a.8.10.1 135074 2epjA 434 6.28e+01 2nxqA 134 6.36e+01 1whtB 153 6.39e+01 1whtB 3a6pA 1204 6.42e+01 1whsB 153 6.43e+01 1whtB 1k1xA 659 6.55e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 3bx6A 192 6.81e+01 3bbdA 205 6.83e+01 c.116.1.6 155061 1vl5A 260 6.84e+01 c.66.1.41 108720 1zy4A 303 6.86e+01 3lwsA 357 6.91e+01 3eu8A 430 7.08e+01 1v9sA 208 7.11e+01 c.61.1.1 119894 3kq0A 192 7.17e+01 3e4rA 324 7.18e+01 1aw2A 256 7.19e+01 1amk c.1.1.1 28523 2q9fA 456 7.21e+01 1t64A 377 7.30e+01 c.42.1.2 106543 1tjoA 182 7.31e+01 a.25.1.1 112461 2djkA 133 7.65e+01 c.47.1.2 131548 3hhyA 280 7.67e+01 1m5yA 408 7.94e+01 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 1kpfA 125 7.95e+01 d.13.1.1 37507 1w0mA 226 7.97e+01 c.1.1.1 109027