# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fzdA 201 2.98e+00 3fib d.171.1.1 42484 2o9pA 454 3.66e+00 3fc7A 125 3.76e+00 1l8rA 101 4.60e+00 a.6.1.4 73700 1i9gA 280 5.22e+00 c.66.1.13 62090 2gm2A 132 5.51e+00 1k1xA 659 5.75e+00 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2g4rA 160 6.42e+00 3fncA 163 7.98e+00 1m70A 190 8.06e+00 a.3.1.4,a.3.1.4 91200,91201 2j5zA 221 8.13e+00 2boyA 254 8.18e+00 3cg1A 296 9.09e+00 2g47A 990 9.10e+00 1pjaA 302 9.19e+00 c.69.1.13 94758 3e4aA 1019 9.34e+00 3e4zA 990 9.53e+00 2wbyA 990 1.09e+01 2qzqA 152 1.14e+01 3cwwA 990 1.29e+01 2bjoA 136 1.52e+01 2yzuA 109 1.53e+01 2ko6A 89 1.53e+01 3f8mA 248 1.61e+01 2epjA 434 1.79e+01 1xo5A 183 1.81e+01 a.39.1.5 115680 1j27A 102 1.81e+01 d.58.50.1 90778 3eu8A 430 1.83e+01 1go4E 100 1.83e+01 h.1.22.1 70296 3k2yA 109 1.85e+01 2cvkA 110 1.91e+01 1w9yA 319 1.98e+01 b.82.2.1 120801 2d39A 237 2.19e+01 2pvpA 367 2.23e+01 3gl5A 239 2.32e+01 2wnpF 217 2.34e+01 3lfkA 129 2.35e+01 2ia0A 171 2.37e+01 3c0kA 396 2.43e+01 2pn6A 150 2.45e+01 3cqbA 107 2.47e+01 2cfxA 144 2.53e+01 a.4.5.32,d.58.4.2 130395,130396 2e7xA 150 2.55e+01 2o4cA 380 2.68e+01 1b66A 140 2.70e+01 1b66A d.96.1.2 40657 2jhmF 218 2.86e+01 3hvzA 78 2.94e+01 1ehwA 162 2.95e+01 1npk d.58.6.1 39088 1whtB 153 3.13e+01 1whtB 1whsB 153 3.15e+01 1whtB 2c2aA 258 3.15e+01 a.30.2.1,d.122.1.3 129662,129663 2i4lA 458 3.26e+01 1a9xB 379 3.29e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1kpeA 126 3.42e+01 1kpf d.13.1.1 37508 2zeqA 78 3.44e+01 d.15.1.1 154405 2trcP 217 3.49e+01 1b9yC c.47.1.6 33051 1ugjA 141 3.49e+01 b.41.1.3 107826 3du6A 596 3.57e+01 1y2qA 143 3.61e+01 2hl0A 143 3.63e+01 2djkA 133 3.64e+01 c.47.1.2 131548 3emvA 253 3.65e+01 1vk3A 615 3.73e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2fb1A 226 3.76e+01 a.4.5.68,d.113.1.6 133225,133226 2hs3A 603 3.90e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1g6hA 257 3.98e+01 1gajA c.37.1.12 60318 3l9vA 189 4.19e+01 1kpfA 125 4.23e+01 d.13.1.1 37507 2b0lA 102 4.24e+01 a.4.5.66 127641 1kpf 126 4.28e+01 1kpf 2gf4A 100 4.34e+01 a.8.10.1 135074 1v9sA 208 4.36e+01 c.61.1.1 119894 3e38A 343 4.39e+01 3ks7A 397 4.42e+01 1wkaA 147 4.43e+01 b.51.1.1 120978 3huiA 126 4.48e+01 2d4gA 171 4.51e+01 2fyfA 398 4.54e+01 3cg3A 320 4.57e+01 1wyjA 125 4.57e+01 3k8pD 709 4.59e+01 1ymtA 246 4.60e+01 2ga8A 359 4.62e+01 1im5A 180 4.72e+01 c.33.1.3 66211 1m32A 366 4.76e+01 c.67.1.3 78508 2bolA 314 4.78e+01 3icvA 316 4.96e+01 3bjkA 153 4.97e+01 3a6pA 1204 4.97e+01 1w0mA 226 5.01e+01 c.1.1.1 109027 3hhyA 280 5.07e+01 3a0yA 152 5.07e+01 3fmsA 209 5.12e+01 2hxjA 144 5.12e+01 a.136.1.1 147432 2pbdP 139 5.14e+01 d.110.1.1 149354 2q9fA 456 5.18e+01 2f06A 144 5.18e+01 d.58.18.11,d.58.18.11 132652,132653 1u6mA 199 5.23e+01 d.108.1.1 113069 1kzyC 259 5.26e+01 c.15.1.4,c.15.1.4 73383,73384 1lq9A 112 5.36e+01 d.58.4.3 78129 3d01A 165 5.39e+01 2extA 77 5.42e+01 b.82.5.1 132563 3h35A 185 5.47e+01 1nz0A 118 5.51e+01 d.14.1.2 86433 1i7dA 659 5.52e+01 1d6mA e.10.1.1 61886 1x7vA 99 5.56e+01 d.58.4.11 109501 1axhA 37 5.57e+01 g.3.6.2 44109 3deeA 249 5.72e+01 3e0dA 1220 5.81e+01 2b1pA 355 5.83e+01 d.144.1.7 127672 3bjnA 165 5.87e+01 3fseA 365 5.87e+01 1uddA 226 5.90e+01 a.132.1.3 107776 3eljA 369 5.91e+01 3lnoA 108 5.93e+01 1pmnA 364 5.95e+01 d.144.1.7 94907 2yx1A 336 6.00e+01 2jc4A 256 6.07e+01 2pavP 139 6.13e+01 d.110.1.1 149350 2b3hA 329 6.24e+01 1zodA 433 6.26e+01 c.67.1.4 125437 1h8mA 140 6.30e+01 1h8mA d.110.4.1 60782 1so2A 420 6.36e+01 a.211.1.2 98936 2hurA 142 6.49e+01 2rfrA 155 6.49e+01 d.17.4.28 152000 3f14A 112 6.50e+01 1svdA 473 6.56e+01 c.1.14.1,d.58.9.1 119057,119058 3kylA 596 6.57e+01 3kxeA 110 6.58e+01 2gz4A 207 6.58e+01 a.211.1.1 147196 2zdtA 364 6.63e+01 d.144.1.7 154400 3e9hA 493 6.66e+01 1mzuA 129 6.74e+01 d.110.3.1 79714 2vpnA 316 6.84e+01 2d74B 148 6.84e+01 3g3lA 327 6.90e+01 3icxA 255 6.97e+01 1gtfA 74 7.15e+01 b.82.5.1 70460 3gyyA 341 7.19e+01 2i2cA 272 7.29e+01 3lwsA 357 7.30e+01 3dm8A 143 7.43e+01 d.17.4.20 157804 1htwA 158 7.45e+01 c.37.1.18 71083 1i0aA 466 7.47e+01 1auwA a.127.1.1 61479 3ct7A 231 7.50e+01 3ctlA 231 7.50e+01 3it4B 205 7.50e+01 3c9uA 342 7.51e+01 d.79.4.1,d.139.1.1 156144,156145 1zghA 260 7.56e+01 b.46.1.1,c.65.1.1 125028,125029 3hinA 275 7.59e+01 1oalA 151 7.64e+01 b.1.8.1 86739 1qwlA 505 7.69e+01 e.5.1.1 96483 2wkbA 125 7.78e+01 2ogfA 122 7.87e+01 2xb2A 411 7.88e+01 2kheA 89 7.91e+01 2vg2A 284 7.92e+01 2vg3A 284 7.99e+01