# List of top-scoring protein chains for t04-100-30-alpha-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3huiA 126 1.43e+00 3fc7A 125 1.61e+00 2ko6A 89 2.43e+00 2vk8A 563 2.80e+00 1qwtA 255 3.01e+00 b.26.1.3 96501 1m70A 190 3.04e+00 a.3.1.4,a.3.1.4 91200,91201 1hxvA 113 3.22e+00 d.26.1.1 71089 1pvdA 537 4.09e+00 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1pjaA 302 4.83e+00 c.69.1.13 94758 3lfkA 129 5.72e+00 2g5dA 422 6.00e+00 b.52.1.4 147083 3dxqA 301 6.34e+00 3fmsA 209 6.65e+00 1gtfA 74 7.08e+00 b.82.5.1 70460 3fncA 163 7.84e+00 2nsaA 170 8.50e+00 3eu8A 430 9.43e+00 1uddA 226 9.76e+00 a.132.1.3 107776 2cvkA 110 9.86e+00 1yaiA 151 9.92e+00 1yaiA b.1.8.1 22289 2z7eA 157 1.02e+01 3dm8A 143 1.03e+01 d.17.4.20 157804 2yzuA 109 1.06e+01 2wnpF 217 1.08e+01 2jhmF 218 1.08e+01 1r5mA 425 1.12e+01 3f8mA 248 1.14e+01 2i4lA 458 1.15e+01 3gbxA 420 1.16e+01 1oalA 151 1.20e+01 b.1.8.1 86739 2extA 77 1.21e+01 b.82.5.1 132563 1dfoA 417 1.39e+01 1bj4A c.67.1.4 34480 3g3lA 327 1.40e+01 2o9pA 454 1.45e+01 3hinA 275 1.47e+01 1vliA 385 1.48e+01 b.85.1.1,c.1.10.6 108830,108831 2gm2A 132 1.48e+01 1w0mA 226 1.50e+01 c.1.1.1 109027 3cklA 298 1.51e+01 1fzdA 201 1.58e+01 3fib d.171.1.1 42484 2zeqA 78 1.60e+01 d.15.1.1 154405 3ct7A 231 1.63e+01 2rinA 298 1.64e+01 2djkA 133 1.65e+01 c.47.1.2 131548 2d39A 237 1.66e+01 1fr2B 134 1.67e+01 d.4.1.1 83257 2peqA 134 1.73e+01 a.280.1.1 149443 2qzqA 152 1.82e+01 1zetA 388 1.84e+01 d.240.1.1,e.8.1.7 124997,124998 1l8rA 101 1.85e+01 a.6.1.4 73700 2gf4A 100 1.86e+01 a.8.10.1 135074 3c25A 383 1.86e+01 1b4fA 82 1.89e+01 1b4fA a.60.1.2 17934 1gxmA 332 1.91e+01 a.102.5.1 76371 2bjoA 136 1.94e+01 3k2yA 109 1.97e+01 3ctlA 231 1.99e+01 3icxA 255 2.05e+01 2qsfX 171 2.12e+01 3loyA 633 2.16e+01 1aocA 175 2.22e+01 1aocA g.17.1.5 44817 3h40A 389 2.23e+01 1c24A 263 2.27e+01 1c24A d.127.1.1 41148 1s4uX 407 2.35e+01 b.69.4.1 112027 2q4vA 170 2.35e+01 d.108.1.1 139878 1s1fA 406 2.40e+01 a.104.1.1 112008 2dpiA 420 2.41e+01 d.240.1.1,e.8.1.7 131612,131613 2d0eA 407 2.42e+01 2d09A 407 2.43e+01 1ehwA 162 2.43e+01 1npk d.58.6.1 39088 2hurA 142 2.45e+01 1xnzA 264 2.47e+01 d.127.1.1 115673 3gv5B 420 2.47e+01 2r80A 141 2.48e+01 2alzA 390 2.49e+01 d.240.1.1,e.8.1.7 126994,126995 3ctdA 213 2.54e+01 a.80.1.2 156981 3cqcB 227 2.55e+01 1akyA 220 2.56e+01 c.37.1.1,g.41.2.1 31896,45197 1rhxA 87 2.64e+01 c.114.1.2 111805 3h4dA 390 2.65e+01 1wapA 75 2.68e+01 1wapA b.82.5.1 28153 2ggcA 263 2.70e+01 d.127.1.1 135127 1wudA 89 2.70e+01 a.60.8.1 121283 1itwA 741 2.79e+01 c.77.1.2 76793 2hinA 71 2.88e+01 2gz4A 207 2.94e+01 a.211.1.1 147196 3g6xA 420 2.96e+01 3kusA 88 3.00e+01 3md3A 166 3.02e+01 3dhrA 142 3.05e+01 1kcqA 104 3.07e+01 d.109.1.1 68449 3gdjA 141 3.12e+01 3e0jB 144 3.24e+01 1emvB 134 3.27e+01 1bxiB d.4.1.1 37135 2b8nA 429 3.29e+01 c.118.1.1 128093 3cqbA 107 3.32e+01 1f00I 282 3.33e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 3lwsA 357 3.43e+01 2a6hC 1119 3.50e+01 e.29.1.1 126264 2gykB 134 3.50e+01 d.4.1.1 135857 1j31A 262 3.54e+01 d.160.1.2 90808 1whsB 153 3.57e+01 1whtB 1irzA 64 3.58e+01 a.4.1.11 76772 1zcjA 463 3.61e+01 1tfe 145 3.62e+01 1tfe 1tfeA 145 3.62e+01 d.43.1.1 38680 1zx2A 147 3.66e+01 d.17.4.2 146033 3lnoA 108 3.66e+01 2j5zA 221 3.67e+01 2pvpA 367 3.68e+01 3eetA 274 3.70e+01 2bx6A 350 3.72e+01 3kheA 191 3.73e+01 3d01A 165 3.76e+01 1txdA 385 3.76e+01 a.87.1.1,b.55.1.1 107422,107423 1xo5A 183 3.77e+01 a.39.1.5 115680 1xr4A 509 3.81e+01 c.124.1.2,c.124.1.2 115860,115861 2j41A 207 3.82e+01 2r44A 331 3.87e+01 2o37A 92 3.88e+01 2x04A 80 3.91e+01 3hh1A 117 3.93e+01 3kdqA 154 3.95e+01 2hi2A 158 3.98e+01 2r0xA 158 4.02e+01 1aj8A 371 4.04e+01 1aj8A a.103.1.1 18900 2o4cA 380 4.05e+01 3c4uA 307 4.07e+01 3id5A 388 4.08e+01 1v9sA 208 4.12e+01 c.61.1.1 119894 1fc4A 401 4.14e+01 1bs0A c.67.1.4 59760 2qswA 100 4.15e+01 d.58.18.13 151326 1uehA 253 4.15e+01 c.101.1.1 99259 2dtxA 264 4.23e+01 3ieyB 153 4.29e+01 2regA 298 4.31e+01 1bgf 124 4.33e+01 1bgf 1bgfA 124 4.33e+01 a.90.1.1 18537 2w72A 141 4.41e+01 2w72C 141 4.44e+01 3ismC 359 4.44e+01 3f9sA 146 4.44e+01 2k0nA 85 4.50e+01 1zghA 260 4.57e+01 b.46.1.1,c.65.1.1 125028,125029 1so2A 420 4.62e+01 a.211.1.2 98936 3c6fA 153 4.64e+01 2pil 159 4.66e+01 2pil 3c1qA 123 4.66e+01 1wkaA 147 4.71e+01 b.51.1.1 120978 3cg1A 296 4.77e+01 3ixtC 26 4.87e+01 3dadA 339 4.89e+01 1i9gA 280 4.90e+01 c.66.1.13 62090 3dcmX 192 4.97e+01 3e4rA 324 5.02e+01 2juyA 28 5.05e+01 1keaA 221 5.11e+01 a.96.1.2 68491 2vsoE 289 5.13e+01 3g1zA 326 5.13e+01 3gnhA 403 5.14e+01 2wkbA 125 5.18e+01 3dv8A 220 5.19e+01 3bh7B 352 5.29e+01 1vyxA 60 5.42e+01 g.44.1.3 114033 1xwrA 97 5.50e+01 a.35.1.9 122406 1wj9A 211 5.52e+01 d.58.53.1,d.58.53.1 114694,114695 2bl9A 238 5.53e+01 2axtZ 62 5.57e+01 f.17.5.1 144941 1widA 130 5.57e+01 b.142.1.2 114667 1u1zA 168 5.58e+01 d.38.1.6 107602 2pexA 153 5.59e+01 3i3qA 211 5.62e+01 1a3oA 141 5.69e+01 1abwA a.1.1.2 15274 2d51A 406 5.81e+01 3hdfA 140 5.82e+01 2x75A 431 5.85e+01 1uhnA 189 5.87e+01 a.39.1.5 99399 2wff1 246 5.90e+01 3a0gA 141 5.92e+01 1whtB 153 5.96e+01 1whtB 1j7yA 141 6.10e+01 a.1.1.2 66426 1ta8A 332 6.10e+01 d.142.2.2 112375 3e38A 343 6.11e+01 2fdiA 211 6.12e+01 b.82.2.10 133311 1q48A 134 6.23e+01 d.224.1.2 95783 3fo3A 525 6.23e+01 2e0cA 409 6.28e+01 2rfrA 155 6.28e+01 d.17.4.28 152000 2ebbA 101 6.32e+01 1f0yA 302 6.37e+01 2hdhA a.100.1.3,c.2.1.6 18793,30197 1rw7A 243 6.40e+01 c.23.16.2 97963 1irdA 141 6.43e+01 a.1.1.2 66286 2rbdA 171 6.47e+01 3kxeA 110 6.48e+01 1hcrA 52 6.48e+01 1hcrA a.4.1.2 16020 2q24A 194 6.50e+01 1wyjA 125 6.51e+01 3kraB 274 6.54e+01 2vlqB 134 6.56e+01 3labA 217 6.57e+01 3l6dA 306 6.60e+01 3e9hA 493 6.61e+01 1r44A 202 6.62e+01 d.65.1.4 104787 3khiA 267 6.62e+01 2bolA 314 6.65e+01 3bomA 142 6.69e+01 1zk8A 183 6.69e+01 a.4.1.9,a.121.1.1 125177,125178 1ru3A 732 6.79e+01 e.26.1.3 97835 2h6rA 219 6.81e+01 1f8yA 157 6.86e+01 1f8xA c.23.14.1 31395 2ixtA 310 6.89e+01 c.41.1.1 147828 3dc4A 344 6.90e+01 2c5uA 375 7.01e+01 1rhs 296 7.04e+01 1rhs 1rhsA 296 7.04e+01 c.46.1.2,c.46.1.2 32703,32704 2w87A 139 7.13e+01 1yqyA 523 7.15e+01 d.92.1.14,d.166.1.1 123903,123904 1d4tA 104 7.22e+01 1d4tA d.93.1.1 40537 2a6mA 155 7.27e+01 d.58.57.1 126287 2vjvA 159 7.29e+01 d.58.57.1 153201 2aioA 269 7.32e+01 d.157.1.1 126829 3a2aA 58 7.36e+01 3bkzA 201 7.38e+01 1g5tA 196 7.45e+01 1g5rA c.37.1.11 32366 2z1eA 342 7.46e+01 d.79.4.1,d.139.1.1 153932,153933 3hkxA 283 7.50e+01 2vyoA 254 7.55e+01 1v6sA 390 7.60e+01 c.86.1.1 100424 2w1vA 276 7.60e+01 1qkrA 188 7.69e+01 1qkrA a.24.9.1 16628 1sq9A 397 7.76e+01 b.69.4.1 105889 1smlA 269 7.91e+01 1smlA d.157.1.1 42053 1ymtA 246 7.94e+01 3fseA 365 7.96e+01