# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3jv1A 182 1.59e+00 3fc7A 125 1.64e+00 3b42A 135 2.90e+00 2hxjA 144 3.20e+00 a.136.1.1 147432 2cttA 104 7.23e+00 1jsuC 84 1.13e+01 1jsuC j.55.1.1 46339 2aplA 157 1.15e+01 a.258.1.1 127132 1x3cA 73 1.25e+01 g.37.1.1 121660 3kdqA 154 1.42e+01 1rd8B 182 1.65e+01 h.3.1.1 97309 2x1wA 110 1.66e+01 1qx2A 76 1.76e+01 a.39.1.1 104622 3f27D 83 1.80e+01 3ku3B 174 1.82e+01 1xo5A 183 1.94e+01 a.39.1.5 115680 1tp4A 97 2.06e+01 a.189.1.1 107183 2x58A 727 2.23e+01 1fzvA 132 2.36e+01 1vpfA g.17.1.1 60159 3k2lA 429 2.38e+01 1eexG 173 2.39e+01 1dioG a.23.2.1 16490 3dm8A 143 2.50e+01 d.17.4.20 157804 1h6wA 312 2.54e+01 d.231.1.1,b.108.1.1 83059,83060 3m6sB 181 2.67e+01 2pviA 157 2.78e+01 3pviA c.52.1.6 33302 1wgoA 123 2.79e+01 b.1.3.1 114618 2vhhA 405 2.83e+01 1aquA 297 2.87e+01 1aquA c.37.1.5 31942 3huiA 126 2.89e+01 1ui8A 638 2.92e+01 b.30.2.1,d.17.2.1,d.17.2.1 99419,99420,99421 1iqyA 638 2.93e+01 b.30.2.1,d.17.2.1,d.17.2.1 76763,76764,76765 1ui7A 638 2.94e+01 b.30.2.1,d.17.2.1,d.17.2.1 99413,99414,99415 1w6gA 646 2.97e+01 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1uspA 139 3.07e+01 d.227.1.1 99879 1fltV 98 3.16e+01 1vpfA g.17.1.1 44751 2vv6A 119 3.29e+01 2eq9C 41 3.29e+01 3eazA 106 3.34e+01 2kc8A 98 3.35e+01 2uurA 245 3.42e+01 1rjoA 646 3.44e+01 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 2b3nA 159 3.52e+01 d.38.1.4 127792 2zl8A 638 3.53e+01 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 2d1wA 638 3.73e+01 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 2zihA 347 3.86e+01 3k67A 159 3.94e+01 2gm2A 132 3.96e+01 3cisA 309 4.05e+01 1b4fA 82 4.05e+01 1b4fA a.60.1.2 17934 3hhwK 421 4.20e+01 1konA 249 4.24e+01 e.39.1.1 72823 2ksdA 115 4.28e+01 1zcjA 463 4.31e+01 3fcgA 90 4.35e+01 3cklA 298 4.37e+01 2kelA 56 4.57e+01 2f4mB 61 4.60e+01 a.189.1.1 132931 1ybzA 91 4.63e+01 a.130.1.1 122901 2k7rA 106 4.76e+01 1x93A 55 4.77e+01 a.43.1.3 145859 1xj4A 119 4.77e+01 d.110.3.2 122027 2ivfB 352 4.88e+01 1z3xA 238 5.04e+01 a.118.1.22,a.261.1.1 124416,124417 2ooxB 97 5.09e+01 d.353.1.1 148941 1tfe 145 5.18e+01 1tfe 1tfeA 145 5.18e+01 d.43.1.1 38680 1nyhA 166 5.33e+01 h.1.23.1 86403 1jsmB 176 5.38e+01 h.3.1.1 63265 1t7sA 137 5.51e+01 a.7.7.1 106636 1l8rA 101 5.53e+01 a.6.1.4 73700 2qvjA 421 5.57e+01 3c9gA 142 5.65e+01 1b16A 254 5.81e+01 1b16A c.2.1.2 29875 1n13A 52 5.83e+01 d.155.1.2 85248 1pq1B 33 5.97e+01 3gtmS 173 5.98e+01 2gnnA 127 5.98e+01 1q38A 89 6.08e+01 b.1.2.1 95663 2jttC 35 6.09e+01 2ql8A 143 6.16e+01 3bj6A 152 6.20e+01 1sbyA 254 6.34e+01 c.2.1.2 118930 1pl5A 142 6.52e+01 h.1.23.1 104186 2a4nA 182 6.59e+01 d.108.1.1 126159 1ruyI 160 6.65e+01 h.3.1.1 97884 2gicA 422 6.76e+01 a.260.1.1 135227 2oyyA 76 6.93e+01 1r5mA 425 6.99e+01 2k1fA 88 7.05e+01 1x9pA 523 7.13e+01 2ko6A 89 7.18e+01 3gyzA 151 7.22e+01 3gbnB 179 7.24e+01 3iiwA 365 7.30e+01 2ahqA 76 7.30e+01 1ar71 302 7.31e+01 1pov1 2waqA 880 7.39e+01 3k26A 366 7.45e+01 1al21 302 7.52e+01 1pov1 2bj7A 138 7.54e+01 a.43.1.3,d.58.18.4 128608,128609 1zy4A 303 7.62e+01 1ar61 302 7.65e+01 1pov1 1kpeA 126 7.66e+01 1kpf d.13.1.1 37508 1aocA 175 7.68e+01 1aocA g.17.1.5 44817 2k2oA 123 7.73e+01 1lswA 131 7.80e+01 d.110.3.2 78181 1uddA 226 7.96e+01 a.132.1.3 107776