# List of top-scoring protein chains for t2k.100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2peqA 134 1.58e-01 a.280.1.1 149443 2ko6A 89 5.35e-01 1m70A 190 1.19e+00 a.3.1.4 91200 a.3.1.4 91201 2qzqA 152 1.28e+00 2nsaA 170 1.35e+00 3hbrA 265 1.48e+00 1fzdA 201 1.78e+00 3fib d.171.1.1 42484 2qcuA 501 2.05e+00 3bhwA 209 2.82e+00 3c1qA 123 3.62e+00 1ax8 146 4.25e+00 1ax8 1ax8A 146 4.25e+00 a.26.1.1 16844 1rzsA 61 4.41e+00 a.35.1.2 105139 3aeiA 99 4.46e+00 3d5lA 221 4.66e+00 2bjoA 136 4.97e+00 1gdtA 183 5.14e+00 2rslA a.4.1.2 16021 c.53.1.1 33348 1l8rA 101 5.32e+00 a.6.1.4 73700 1zcjA 463 5.37e+00 2ia0A 171 5.64e+00 2j5zA 221 5.67e+00 3by6A 126 5.81e+00 3e0jB 144 6.60e+00 2pvpA 367 6.73e+00 2boyA 254 6.85e+00 3e4rA 324 6.88e+00 3f8mA 248 6.94e+00 3fncA 163 7.11e+00 1o26A 232 7.54e+00 d.207.1.1 86566 3e38A 343 7.68e+00 1keaA 221 7.95e+00 a.96.1.2 68491 2djkA 133 8.94e+00 c.47.1.2 131548 3cqcB 227 9.02e+00 2hinA 71 9.24e+00 3l3sA 263 9.40e+00 3fc7A 125 1.10e+01 1ta8A 332 1.11e+01 d.142.2.2 112375 3fmsA 209 1.12e+01 2wnpF 217 1.13e+01 1ehwA 162 1.14e+01 1npk d.58.6.1 39088 2cj4A 150 1.14e+01 a.29.6.1 130518 2q24A 194 1.15e+01 1bgf 124 1.17e+01 1bgf 1bgfA 124 1.17e+01 a.90.1.1 18537 3hemA 302 1.17e+01 3k2yA 109 1.17e+01 3k28A 429 1.22e+01 2d39A 237 1.26e+01 3fo3A 525 1.30e+01 1uddA 226 1.31e+01 a.132.1.3 107776 2glwA 92 1.36e+01 1cpo 299 1.39e+01 1cpo 1pjaA 302 1.41e+01 c.69.1.13 94758 2jhmF 218 1.44e+01 3fddA 533 1.51e+01 2ciwA 299 1.55e+01 a.39.3.1 130502 a.39.3.1 130503 1i9gA 280 1.55e+01 c.66.1.13 62090 2x75A 431 1.66e+01 3ckdA 312 1.69e+01 1sq9A 397 1.71e+01 b.69.4.1 105889 3kdqA 154 1.73e+01 1vkeA 133 1.74e+01 a.152.1.2 108650 3bczA 293 1.76e+01 3hhtB 229 1.76e+01 2nn6B 249 1.78e+01 d.14.1.4 148297 d.101.1.1 148298 2cfxA 144 1.86e+01 a.4.5.32 130395 d.58.4.2 130396 2ot4A 525 1.87e+01 3cp8A 641 1.93e+01 3dm8A 143 1.96e+01 d.17.4.20 157804 2x58A 727 2.04e+01 2x04A 80 2.05e+01 2p67A 341 2.05e+01 c.37.1.10 149269 3kheA 191 2.05e+01 1b4fA 82 2.07e+01 1b4fA a.60.1.2 17934 1p8cA 145 2.15e+01 a.152.1.2 94354 1w9yA 319 2.15e+01 b.82.2.1 120801 3gr3A 230 2.16e+01 1y8aA 332 2.18e+01 c.108.1.24 145913 1dguA 183 2.22e+01 1dguA a.39.1.5 17333 2uubD 209 2.23e+01 d.66.1.2 139935 1yhuB 144 2.30e+01 2vqeD 209 2.31e+01 d.66.1.2 153428 3hinA 275 2.33e+01 3eyxA 216 2.35e+01 1ru3A 732 2.39e+01 e.26.1.3 97835 2frhA 127 2.40e+01 a.4.5.28 133988 2gm2A 132 2.41e+01 3kyjA 144 2.42e+01 1vbgA 876 2.43e+01 c.1.12.2 119951 c.8.1.1 119952 d.142.1.5 119953 2gf4A 100 2.47e+01 a.8.10.1 135074 2jc7A 244 2.47e+01 1ubpB 122 2.50e+01 1ubpB b.85.3.1 28346 3c8tA 451 2.52e+01 1gtfA 74 2.53e+01 b.82.5.1 70460 2z7eA 157 2.56e+01 1in4A 334 2.61e+01 1hqcA a.4.5.11 62597 c.37.1.20 62598 1vl2A 421 2.61e+01 c.26.2.1 108708 d.210.1.1 108709 1in6A 334 2.63e+01 1hqcA a.4.5.11 62601 c.37.1.20 62602 3huiA 126 2.67e+01 2hurA 142 2.68e+01 4ubpB 126 2.69e+01 1ubpB b.85.3.1 28345 1fjgD 209 2.70e+01 1c05A d.66.1.2 39553 3k8pD 709 2.70e+01 3fv7A 244 2.72e+01 3lfkA 129 2.79e+01 3a6pA 1204 2.83e+01 2fcaA 213 2.84e+01 c.66.1.53 133262 3ctdA 213 2.86e+01 a.80.1.2 156981 1i7dA 659 2.92e+01 1d6mA e.10.1.1 61886 2gy9D 204 2.94e+01 d.66.1.2 145233 1eb7A 323 3.10e+01 1eb7A a.3.1.5 59404 a.3.1.5 59405 1gm5A 780 3.11e+01 a.24.21.1 65298 b.40.4.9 65299 c.37.1.19 65300 c.37.1.19 65301 2qsfX 171 3.11e+01 3k67A 159 3.11e+01 1f0yA 302 3.13e+01 2hdhA a.100.1.3 18793 c.2.1.6 30197 3h35A 185 3.15e+01 2hxjA 144 3.19e+01 a.136.1.1 147432 2wgwA 248 3.28e+01 1b66A 140 3.39e+01 1b66A d.96.1.2 40657 1h6zA 913 3.40e+01 c.1.12.2 70906 c.8.1.1 70907 d.142.1.5 70908 1moq 368 3.49e+01 1moq 1moqA 368 3.49e+01 c.80.1.1 35302 1f52A 468 3.49e+01 1lgr d.15.9.1 37839 d.128.1.1 41169 1yqyA 523 3.52e+01 d.92.1.14 123903 d.166.1.1 123904 3fm5A 150 3.54e+01 3kusA 88 3.56e+01 1v9sA 208 3.56e+01 c.61.1.1 119894 1wyjA 125 3.58e+01 2f06A 144 3.63e+01 d.58.18.11 132652 d.58.18.11 132653 2vkjA 106 3.68e+01 1qx2A 76 3.73e+01 a.39.1.1 104622 1hxvA 113 3.78e+01 d.26.1.1 71089 1s4uX 407 3.78e+01 b.69.4.1 112027 1dfoA 417 3.81e+01 1bj4A c.67.1.4 34480 1uhnA 189 3.83e+01 a.39.1.5 99399 2wk7A 393 3.84e+01 1kdxA 81 3.87e+01 1kdxA a.12.1.1 16375 1rm6A 769 3.91e+01 d.41.1.1 111872 d.133.1.1 111873 1mjgM 729 3.92e+01 e.26.1.3 79204 3i04M 728 3.96e+01 3ieyB 153 3.97e+01