# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2h1tA 188 4.29e+00 b.178.1.1 147215 2hw2A 143 4.32e+00 1k89 449 6.25e+00 1k89 2cxxA 190 6.72e+00 c.37.1.8 131013 1i6wA 181 6.97e+00 1i6wA c.69.1.18 61859 1ispA 181 7.46e+00 c.69.1.18 76778 2glfA 450 8.20e+00 1ih7A 903 8.44e+00 1clqA c.55.3.5,e.8.1.1 62375,62376 2obdA 476 8.70e+00 1tljA 213 9.46e+00 d.282.1.1 107126 1clqA 903 1.03e+01 1clqA c.55.3.5,e.8.1.1 33717,43006 3gkuA 225 1.12e+01 1g8aA 227 1.14e+01 c.66.1.3 90506 1mkyA 439 1.19e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 3e8tA 220 1.37e+01 1rsy 152 1.40e+01 1rsy 1rsyA 152 1.40e+01 b.7.1.2 23192 2aj7A 163 1.45e+01 b.158.1.1 126842 2esnA 310 1.46e+01 a.4.5.37,c.94.1.1 132333,132334 3l8bA 906 1.47e+01 3h5lA 419 1.49e+01 2ox7A 155 1.58e+01 b.172.1.1 149054 3lzjA 903 1.68e+01 3iayA 919 1.80e+01 2dexX 671 1.84e+01 b.2.9.1,b.6.1.6,d.126.1.5 131436,131437,131438 2cxhA 217 1.90e+01 c.51.1.2 131005 3fleA 249 1.93e+01 1wdaA 670 1.97e+01 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 3menA 362 1.97e+01 1yd9A 193 2.14e+01 c.50.1.2 122976 2oo6A 409 2.43e+01 1ig9A 903 2.59e+01 1clqA c.55.3.5,e.8.1.1 62367,62368 3ihkA 218 2.91e+01 1m7bA 184 3.03e+01 c.37.1.8 74572 3gwfA 540 3.08e+01 1ukxA 137 3.27e+01 d.20.1.3 107919 2fqmA 75 3.28e+01 d.378.1.1 147042 2p1mB 594 3.34e+01 3ds8A 254 3.48e+01 2q0iA 303 3.50e+01 d.157.1.14 149986 1kit 757 3.61e+01 1kit 3c1qA 123 3.79e+01 1u6rA 380 3.81e+01 a.83.1.1,d.128.1.2 119600,119601 2zv3A 115 3.82e+01 1bolA 222 3.83e+01 1bolA d.124.1.1 41120 1x12A 208 3.93e+01 3fo5A 258 3.97e+01 1b56A 135 4.12e+01 b.60.1.2 27183 3floB 206 4.15e+01 3bkrA 126 4.18e+01 2rmpA 361 4.24e+01 2rmpA b.50.1.2 26825 1xn5A 146 4.33e+01 d.129.3.5 115574 3go2A 409 4.33e+01 3d01A 165 4.45e+01 2rhqB 795 4.81e+01 3bdqA 110 4.91e+01 2ea7A 434 4.92e+01 2j6vA 301 4.93e+01 2qztA 111 5.00e+01 1yzhA 214 5.00e+01 c.66.1.53 124277 3lpmA 259 5.21e+01 1x05A 129 5.29e+01 b.55.1.1 121543 3f04A 143 5.29e+01 1v6fA 151 5.32e+01 d.109.1.2 108395 2jzbB 74 5.53e+01 3hv8A 268 5.64e+01 1zr5A 214 5.71e+01 c.50.1.2 125525 2r60A 499 5.72e+01 3eh2A 766 5.75e+01 3kk7A 541 5.94e+01 3isqA 393 5.96e+01 1x3zA 335 6.00e+01 d.3.1.4 121673 2fsrA 195 6.05e+01 d.108.1.1 134036 3b7nA 320 6.14e+01 1svdA 473 6.16e+01 c.1.14.1,d.58.9.1 119057,119058 2je3A 186 6.20e+01 1bqnA 558 6.27e+01 1rthA c.55.3.1,e.8.1.2 33599,43064 2qxlA 658 6.29e+01 3mmcA 418 6.40e+01 3h8vA 292 6.42e+01 1cwwA 102 6.47e+01 1cy5A a.77.1.3 18434 3lp5A 250 6.50e+01 1cy5A 97 6.58e+01 1cy5A a.77.1.3 18430 1hd2A 161 6.65e+01 c.47.1.10 60962 3ctzA 623 6.77e+01 2qkbA 154 6.83e+01 3c7bA 417 6.89e+01 d.58.1.5,d.58.36.2,d.134.1.1 156001,156002,156003 1jssA 224 7.03e+01 d.129.3.2 71844 3ginA 160 7.08e+01 1vlrA 350 7.10e+01 d.13.1.3,d.246.1.1 108860,108861 3fz3A 531 7.10e+01 2hy7A 406 7.11e+01 3hlfA 432 7.17e+01 1d8jA 81 7.26e+01 1d8jA a.4.5.18 16153 1xiwA 105 7.53e+01 b.1.1.4 115367 3eeyA 197 7.90e+01 2dpkA 152 7.97e+01 b.1.27.1 131616