# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3gwfA 540 2.78e+00 2h1tA 188 3.37e+00 b.178.1.1 147215 2ox7A 155 3.62e+00 b.172.1.1 149054 3gkuA 225 3.91e+00 1x12A 208 4.38e+00 1cx8A 639 6.09e+00 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17782,30763,33851 2cxhA 217 6.16e+00 c.51.1.2 131005 1ispA 181 7.08e+00 c.69.1.18 76778 1i6wA 181 7.11e+00 1i6wA c.69.1.18 61859 1g8aA 227 7.15e+00 c.66.1.3 90506 3f04A 143 7.48e+00 1rsy 152 7.59e+00 1rsy 1rsyA 152 7.59e+00 b.7.1.2 23192 1cx8B 639 8.79e+00 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17783,30764,33852 2obdA 476 9.58e+00 1ih7A 903 1.10e+01 1clqA c.55.3.5,e.8.1.1 62375,62376 1w0pA 781 1.13e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 3bbjA 272 1.21e+01 3h5lA 419 1.26e+01 1kit 757 1.27e+01 1kit 2oo6A 409 1.36e+01 3go2A 409 1.39e+01 2r6oA 294 1.50e+01 2j6vA 301 1.54e+01 1mkyA 439 1.55e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1vlrA 350 1.65e+01 d.13.1.3,d.246.1.1 108860,108861 3ihkA 218 1.73e+01 2hw2A 143 1.74e+01 1clqA 903 1.75e+01 1clqA c.55.3.5,e.8.1.1 33717,43006 1g60A 260 1.85e+01 c.66.1.11 70151 1s1dA 331 1.86e+01 b.67.3.1 98344 1bynA 128 2.09e+01 1rsy b.7.1.2 23193 1yzhA 214 2.10e+01 c.66.1.53 124277 1iu8A 206 2.10e+01 c.56.4.1 71436 2hy7A 406 2.16e+01 3e8tA 220 2.43e+01 2esnA 310 2.44e+01 a.4.5.37,c.94.1.1 132333,132334 1st0A 337 2.52e+01 d.13.1.3,d.246.1.1 98979,98980 2r60A 499 2.65e+01 3kasA 640 2.66e+01 3bl9A 301 2.67e+01 d.13.1.3,d.246.1.1 155382,155383 2whgA 230 2.70e+01 1ko3A 230 2.71e+01 d.157.1.1 90974 1on0A 158 2.74e+01 d.108.1.1 87095 1ig9A 903 2.80e+01 1clqA c.55.3.5,e.8.1.1 62367,62368 3l8bA 906 2.84e+01 1u6rA 380 2.86e+01 a.83.1.1,d.128.1.2 119600,119601 3fo5A 258 2.88e+01 2zv3A 115 3.21e+01 1ufhA 180 3.24e+01 d.108.1.1 88485 1q7fA 286 3.28e+01 b.68.9.1 96036 1cwwA 102 3.31e+01 1cy5A a.77.1.3 18434 3hurA 395 3.36e+01 3lpmA 259 3.44e+01 1v9cA 218 3.57e+01 c.23.17.1 100533 3h8vA 292 3.59e+01 1x3zA 335 3.67e+01 d.3.1.4 121673 1bolA 222 3.71e+01 1bolA d.124.1.1 41120 1z9lA 128 3.75e+01 1d8jA 81 4.02e+01 1d8jA a.4.5.18 16153 3bkrA 126 4.06e+01 1tljA 213 4.17e+01 d.282.1.1 107126 1ugjA 141 4.19e+01 b.41.1.3 107826 2iubA 363 4.60e+01 d.328.1.1,f.17.3.1 137669,137670 2jzfA 143 4.63e+01 1hn4A 131 4.65e+01 a.133.1.2 65893 1qx2A 76 4.70e+01 a.39.1.1 104622 2ygsA 92 4.79e+01 1cy5A a.77.1.3 18431 2jzbB 74 4.83e+01 1uc2A 481 4.91e+01 d.261.1.1 99161 2i8dA 123 4.95e+01 d.198.4.1 147561 2cxxA 190 4.95e+01 c.37.1.8 131013 1k89 449 4.98e+01 1k89 3lzjA 903 5.04e+01 1v6fA 151 5.21e+01 d.109.1.2 108395 2q4vA 170 5.40e+01 d.108.1.1 139878 3ds8A 254 5.47e+01 1augA 215 5.72e+01 1a2zA c.56.4.1 33798 3e9tA 114 5.88e+01 3fleA 249 5.89e+01 3hd0A 237 5.90e+01 3c0qA 301 5.91e+01 3hv9A 265 5.95e+01 3hikA 237 5.97e+01 3f9sA 146 6.04e+01 1tvzA 388 6.16e+01 c.95.1.2,c.95.1.2 107367,107368 3cniA 156 6.19e+01 3fvhA 237 6.30e+01 2hn2A 354 6.30e+01 d.328.1.1,f.17.3.1 136619,136620 1ukxA 137 6.44e+01 d.20.1.3 107919 3icyA 118 6.46e+01 1qh4A 380 6.51e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 2izpA 303 6.66e+01 a.250.1.1 137826 2rhqB 795 6.86e+01 3c1qA 123 6.93e+01 1xpkC 388 6.94e+01 c.95.1.2,c.95.1.2 115747,115748 2z2mA 168 6.95e+01 1npeA 267 6.97e+01 b.68.5.1 92032 1fljA 260 6.98e+01 2cba b.74.1.1 27954 1xx0A 127 6.99e+01 b.55.1.1 122412 3kxeC 88 7.21e+01 3hv8A 268 7.24e+01 1nt2A 210 7.24e+01 c.66.1.3 86149 1b56A 135 7.26e+01 b.60.1.2 27183 1yo1A 260 7.32e+01 2hk9A 275 7.35e+01 2dkfA 431 7.40e+01 d.157.1.10 146536 1rtwA 220 7.50e+01 a.132.1.3 97823 2fqmA 75 7.52e+01 d.378.1.1 147042 3k5rA 218 7.55e+01 3bjoA 103 7.55e+01 3ks3A 260 7.56e+01 1knxA 312 7.63e+01 c.98.2.1,c.91.1.2 77459,77460 3fz3A 531 7.64e+01 1z2iA 358 7.64e+01 2pmuA 110 7.65e+01 3floB 206 7.68e+01 2bbeA 108 7.73e+01 3gqhA 163 7.76e+01 3f85A 463 7.85e+01 2w36A 225 7.88e+01 3bn0A 112 7.93e+01 d.27.1.1 155425 2citA 282 7.94e+01 c.1.8.3 130499