# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3gkuA 225 4.01e-01 3gwfA 540 5.41e-01 1ispA 181 7.86e-01 c.69.1.18 76778 2h1tA 188 8.68e-01 b.178.1.1 147215 1i6wA 181 1.02e+00 1i6wA c.69.1.18 61859 1x12A 208 1.18e+00 1g60A 260 1.72e+00 c.66.1.11 70151 3h5lA 419 1.74e+00 3e8tA 220 1.97e+00 1kit 757 2.40e+00 1kit 1wdaA 670 3.14e+00 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 2dexX 671 3.73e+00 b.2.9.1,b.6.1.6,d.126.1.5 131436,131437,131438 1g8aA 227 4.22e+00 c.66.1.3 90506 2ea7A 434 4.58e+00 2ox7A 155 4.59e+00 b.172.1.1 149054 3f04A 143 5.18e+00 1q7fA 286 5.21e+00 b.68.9.1 96036 3gwaA 365 5.57e+00 2r6oA 294 5.68e+00 1clqA 903 6.30e+00 1clqA c.55.3.5,e.8.1.1 33717,43006 2axqA 467 6.43e+00 2cxxA 190 6.56e+00 c.37.1.8 131013 1w0pA 781 6.75e+00 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 3enbA 222 7.01e+00 c.55.3.14 158189 2z6cA 129 7.83e+00 1hn4A 131 7.99e+00 a.133.1.2 65893 1tljA 213 8.09e+00 d.282.1.1 107126 2q4vA 170 8.20e+00 d.108.1.1 139878 1rsy 152 8.30e+00 1rsy 1rsyA 152 8.30e+00 b.7.1.2 23192 1ih7A 903 8.33e+00 1clqA c.55.3.5,e.8.1.1 62375,62376 3l8bA 906 9.17e+00 1cwwA 102 9.78e+00 1cy5A a.77.1.3 18434 3lzjA 903 9.94e+00 1v9cA 218 1.01e+01 c.23.17.1 100533 1k89 449 1.02e+01 1k89 2j6vA 301 1.11e+01 1iyeA 309 1.12e+01 e.17.1.1 83786 2oo6A 409 1.16e+01 1a7j 290 1.19e+01 1a7j 1a7jA 290 1.19e+01 c.37.1.6 31952 3go2A 409 1.21e+01 3e8vA 82 1.24e+01 2ygsA 92 1.31e+01 1cy5A a.77.1.3 18431 1jnuA 104 1.35e+01 d.110.3.6 71762 1cy5A 97 1.36e+01 1cy5A a.77.1.3 18430 1ig9A 903 1.42e+01 1clqA c.55.3.5,e.8.1.1 62367,62368 1kcgC 178 1.42e+01 d.19.1.1 68440 1cx8A 639 1.43e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17782,30763,33851 2wjrA 214 1.47e+01 2zv3A 115 1.53e+01 1d5rA 324 1.53e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 2obdA 476 1.60e+01 3f9sA 146 1.69e+01 3lacA 215 1.70e+01 1bynA 128 1.77e+01 1rsy b.7.1.2 23193 1oi4A 193 1.82e+01 c.23.16.2 144364 1yt5A 258 1.83e+01 3bbjA 272 1.85e+01 3fz3A 531 1.85e+01 3f85A 463 1.91e+01 1ykjA 394 1.93e+01 c.3.1.2,d.16.1.2 145914,145915 1u1sA 82 1.99e+01 b.38.1.2 119451 1qmyA 167 2.00e+01 1qmyA d.3.1.2 37094 2hy7A 406 2.07e+01 1bolA 222 2.08e+01 1bolA d.124.1.1 41120 1g2rA 100 2.15e+01 1g2rA d.192.1.1 60231 3l8qA 350 2.18e+01 3eeyA 197 2.23e+01 3hv8A 268 2.28e+01 1odtC 318 2.29e+01 c.69.1.25 86885 2dulA 378 2.31e+01 c.66.1.58 146588 3cniA 156 2.41e+01 3bkrA 126 2.46e+01 1otkA 249 2.49e+01 a.25.1.2 93521 1fjgP 88 2.49e+01 1emwA d.27.1.1 38444 3c1qA 123 2.59e+01 1rtwA 220 2.69e+01 a.132.1.3 97823 2irfG 113 2.69e+01 2irfG a.4.5.23 16185 3bn0A 112 2.78e+01 d.27.1.1 155425 1d8jA 81 2.79e+01 1d8jA a.4.5.18 16153 2vqeP 88 2.84e+01 i.1.1.1 153440 3lpmA 259 2.87e+01 2rhqB 795 2.88e+01 1r03A 182 2.96e+01 a.25.1.1 104675 1on0A 158 2.98e+01 d.108.1.1 87095 2glfA 450 3.06e+01 1hk9A 74 3.11e+01 b.38.1.2 83541 2a1fA 247 3.13e+01 c.73.1.3 125991 2nxpA 156 3.13e+01 d.379.1.1 148504 1z2iA 358 3.17e+01 1nt2A 210 3.27e+01 c.66.1.3 86149 2bneA 241 3.29e+01 c.73.1.3 128824 1pu1A 94 3.30e+01 d.266.1.1 104307 2hw2A 143 3.31e+01 2hk9A 275 3.34e+01 1ufhA 180 3.42e+01 d.108.1.1 88485 2cdcA 366 3.50e+01 1nycA 111 3.50e+01 b.61.2.2 92336 1u5xA 140 3.50e+01 b.22.1.1 113055 2uubP 88 3.51e+01 d.27.1.1 139947 3h8vA 292 3.60e+01 2cy2A 174 3.61e+01 d.108.1.1 131016 2audA 257 3.65e+01 2fy7A 287 3.73e+01 1b56A 135 3.79e+01 b.60.1.2 27183 3gqhA 163 3.83e+01 3hv9A 265 3.87e+01 3d2fA 675 3.92e+01 2qkbA 154 3.94e+01 1l7aA 318 3.96e+01 c.69.1.25 77772 2wbsA 89 3.97e+01 3ihkA 218 3.99e+01 2atrA 138 4.01e+01 d.108.1.1 127305 2j97A 109 4.03e+01 1vbiA 344 4.07e+01 1iqqA 200 4.08e+01 d.124.1.1 66274 1pbe 394 4.16e+01 1pbe 1pbeA 394 4.16e+01 c.3.1.2,d.16.1.2 30338,37869 1yroB 286 4.16e+01 c.68.1.2 123932 1zr5A 214 4.17e+01 c.50.1.2 125525 1ualA 274 4.19e+01 c.116.1.4 88383 2gigA 257 4.21e+01 1pztA 286 4.22e+01 c.68.1.2 95470 3iayA 919 4.23e+01 1nmmB 286 4.23e+01 c.68.1.2 80662 1vzqH 250 4.23e+01 1nf5B 286 4.24e+01 c.68.1.2 80454 3gkeA 349 4.27e+01 1n9lA 109 4.39e+01 d.110.3.6 85468 1fgxA 288 4.44e+01 1fgxA c.68.1.2 34508 3mbjA 291 4.46e+01 1xahA 354 4.56e+01 3ds8A 254 4.58e+01 2jzfA 143 4.64e+01 1cx8B 639 4.74e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17783,30764,33852 1yd9A 193 4.75e+01 c.50.1.2 122976 2wkqA 332 4.75e+01 2wkrA 332 4.77e+01 2carA 196 4.82e+01 c.51.4.1 130161 1aisB 200 4.86e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 3bjoA 103 4.91e+01 3cz8A 319 4.92e+01 2v0uA 146 5.01e+01 1qq2A 199 5.07e+01 1qq2A c.47.1.10 33064 1iu8A 206 5.09e+01 c.56.4.1 71436 2vh1A 220 5.13e+01 1mjnA 179 5.16e+01 c.62.1.1 79210 3guxA 314 5.35e+01 2chdA 142 5.36e+01 1v8hA 107 5.42e+01 b.1.18.19 119870 3bofA 566 5.42e+01 c.1.21.2,c.1.26.1 155445,155446 2hqlA 110 5.50e+01 2vw9A 134 5.51e+01 2o6fA 189 5.55e+01 2esnA 310 5.57e+01 a.4.5.37,c.94.1.1 132333,132334 3ei3A 1158 5.66e+01 1jmmA 377 5.78e+01 b.30.6.1 71749 1ebbA 202 5.86e+01 c.60.1.1 64900 1u6rA 380 5.87e+01 a.83.1.1,d.128.1.2 119600,119601 2jzdA 129 5.91e+01 1bw0A 416 5.92e+01 1bw0A c.67.1.1 34385 3fqiA 417 5.96e+01 1z9lA 128 5.97e+01 2qg3A 208 6.06e+01 1xn5A 146 6.09e+01 d.129.3.5 115574 1mkyA 439 6.13e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2bvrH 252 6.18e+01 3fvtA 320 6.21e+01 3ilvA 634 6.31e+01 2hbpA 68 6.32e+01 2arzA 247 6.32e+01 b.45.1.1 127225 3fleA 249 6.34e+01 3cneA 175 6.35e+01 1ucyH 150 6.46e+01 1ucyH 3kasA 640 6.47e+01 3brcA 156 6.55e+01 2w2sA 202 6.57e+01 2qz7A 194 6.58e+01 2oaaA 249 6.60e+01 1t8qA 336 6.61e+01 c.1.18.3 106669 1ff9A 450 6.64e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 3lhnA 126 6.66e+01 1s4uX 407 6.70e+01 b.69.4.1 112027 2digA 68 6.70e+01 b.34.9.1 131529 2cw8A 537 6.72e+01 3b7nA 320 6.74e+01 2r7hA 177 6.83e+01 1k0iA 394 6.85e+01 c.3.1.2,d.16.1.2 67942,67943 2jzbB 74 6.88e+01 1a3gA 308 6.93e+01 1daaA e.17.1.1 43286 3floB 206 6.94e+01 3d3yA 425 6.96e+01 2icwG 213 7.00e+01 a.202.1.1 137251 1ydyA 356 7.13e+01 c.1.18.3 123006 1lfaA 187 7.16e+01 1ido c.62.1.1 34122 1yzhA 214 7.29e+01 c.66.1.53 124277 3lfmA 495 7.31e+01 1y13A 181 7.37e+01 d.96.1.2 116319 1knxA 312 7.38e+01 c.98.2.1,c.91.1.2 77459,77460 1cj3A 392 7.39e+01 1pbe c.3.1.2,d.16.1.2 30347,37878 3mggA 276 7.39e+01 3ginA 160 7.44e+01 1dk8A 147 7.45e+01 1agrE a.91.1.1 18548 1bdyA 123 7.48e+01 1bdyA b.7.1.1 23190 2v44A 189 7.52e+01 3ibwA 88 7.59e+01 1sq9A 397 7.60e+01 b.69.4.1 105889 1h8gA 95 7.62e+01 b.109.1.1 65735 1ug8A 87 7.67e+01 d.68.7.1 107825 2o35A 105 7.68e+01 a.293.1.1 148566 1yqyA 523 7.70e+01 d.92.1.14,d.166.1.1 123903,123904 3c3vA 510 7.73e+01 1wtjA 343 7.74e+01 3mgkA 211 7.76e+01 3cp5A 124 7.84e+01 2wkpA 332 7.90e+01