# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2h1tA 188 2.11e+00 b.178.1.1 147215 3gwfA 540 2.29e+00 3ipkA 497 2.69e+00 1g8aA 227 2.83e+00 c.66.1.3 90506 3e8tA 220 3.32e+00 1i6wA 181 3.93e+00 1i6wA c.69.1.18 61859 1ispA 181 4.10e+00 c.69.1.18 76778 1hd2A 161 4.17e+00 c.47.1.10 60962 1jmmA 377 4.67e+00 b.30.6.1 71749 1nn7A 105 5.42e+00 d.42.1.2 85894 3gkuA 225 6.58e+00 1k0iA 394 6.80e+00 c.3.1.2,d.16.1.2 67942,67943 3h5lA 419 8.43e+00 2obdA 476 8.82e+00 3ioxA 497 9.29e+00 1x12A 208 9.96e+00 2ox7A 155 1.25e+01 b.172.1.1 149054 1pbe 394 1.26e+01 1pbe 1pbeA 394 1.26e+01 c.3.1.2,d.16.1.2 30338,37869 3hv8A 268 1.29e+01 1cipA 353 1.40e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 2p1mB 594 1.60e+01 1pu1A 94 1.89e+01 d.266.1.1 104307 1x82A 190 1.92e+01 b.82.1.7 114955 3ihkA 218 1.93e+01 2r6oA 294 2.00e+01 2q0iA 303 2.04e+01 d.157.1.14 149986 1qxrA 189 2.04e+01 b.82.1.7 96552 1rsy 152 2.05e+01 1rsy 1rsyA 152 2.05e+01 b.7.1.2 23192 2gc1A 188 2.12e+01 b.82.1.7 134928 3eeyA 197 2.19e+01 1urmA 172 2.33e+01 c.47.1.10 113413 1bolA 222 2.41e+01 1bolA d.124.1.1 41120 3bbjA 272 2.44e+01 1xahA 354 2.44e+01 3f85A 463 2.47e+01 1ug8A 87 2.48e+01 d.68.7.1 107825 1kcgC 178 2.56e+01 d.19.1.1 68440 2i8dA 123 2.85e+01 d.198.4.1 147561 1t7vA 278 2.90e+01 b.1.1.2,d.19.1.1 112302,112303 2hy7A 406 2.94e+01 1jssA 224 2.95e+01 d.129.3.2 71844 1svsA 353 2.99e+01 c.37.1.8 106051 3biyA 380 3.04e+01 1tljA 213 3.08e+01 d.282.1.1 107126 3duzA 487 3.09e+01 2zv3A 115 3.14e+01 2jfzA 255 3.20e+01 2cxhA 217 3.39e+01 c.51.1.2 131005 2eigA 234 3.41e+01 1de4C 640 3.42e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 3hurA 395 3.53e+01 2esnA 310 3.54e+01 a.4.5.37,c.94.1.1 132333,132334 2oo6A 409 3.58e+01 2cxxA 190 3.64e+01 c.37.1.8 131013 1kit 757 3.73e+01 1kit 2rhqB 795 3.78e+01 1z2iA 358 3.79e+01 1nt2A 210 3.92e+01 c.66.1.3 86149 1tp9A 162 3.92e+01 c.47.1.10 119306 2atrA 138 3.93e+01 d.108.1.1 127305 1lshB 319 4.05e+01 f.7.1.1 74245 2wfcA 167 4.15e+01 3go2A 409 4.15e+01 1q40B 219 4.15e+01 d.17.4.2 95771 2cy2A 174 4.16e+01 d.108.1.1 131016 2qflA 267 4.25e+01 1vqoJ 145 4.28e+01 c.21.1.1 120371 3enbA 222 4.36e+01 c.55.3.14 158189 3ie2A 431 4.37e+01 1vmeA 410 4.38e+01 c.23.5.1,d.157.1.3 108893,108894 1zm0A 114 4.39e+01 b.55.1.1 125276 3bdqA 110 4.46e+01 3f9sA 146 4.52e+01 1o22A 170 4.56e+01 d.238.1.1 86557 2qztA 111 4.56e+01 2r7hA 177 4.67e+01 1g60A 260 4.70e+01 c.66.1.11 70151 3l8bA 906 4.71e+01 1ugjA 141 4.71e+01 b.41.1.3 107826 1nrjA 158 4.72e+01 d.110.4.4 86124 3fo5A 258 4.80e+01 1lc0A 294 4.81e+01 c.2.1.3,d.81.1.4 73823,73824 2q4vA 170 4.85e+01 d.108.1.1 139878 2dkfA 431 4.86e+01 d.157.1.10 146536 3fleA 249 4.93e+01 2dexX 671 5.02e+01 b.2.9.1,b.6.1.6,d.126.1.5 131436,131437,131438 1w0pA 781 5.06e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 3ie1A 431 5.13e+01 1wdaA 670 5.14e+01 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 2i4lA 458 5.15e+01 3hikA 237 5.25e+01 1u1sA 82 5.30e+01 b.38.1.2 119451 1rtwA 220 5.36e+01 a.132.1.3 97823 3c3yA 237 5.40e+01 1r03A 182 5.43e+01 a.25.1.1 104675 2hqlA 110 5.46e+01 3fvhA 237 5.47e+01 3il5A 343 5.50e+01 1b56A 135 5.61e+01 b.60.1.2 27183 3fz3A 531 5.63e+01 1umwA 237 5.82e+01 d.223.1.2,d.223.1.2 99631,99632 3ie0A 431 5.83e+01 3e9tA 114 5.89e+01 3cniA 156 5.96e+01 3gwaA 365 6.03e+01 3a4yA 431 6.04e+01 3lzjA 903 6.19e+01 3hihA 223 6.23e+01 1q7fA 286 6.23e+01 b.68.9.1 96036 1vb5A 276 6.24e+01 c.124.1.5 113604 1ssfA 156 6.42e+01 b.34.9.1,b.34.9.1 105982,105983 1yzhA 214 6.54e+01 c.66.1.53 124277 1ykjA 394 6.55e+01 c.3.1.2,d.16.1.2 145914,145915 2bf6A 449 6.61e+01 2wbuA 90 6.68e+01 1xx0A 127 6.69e+01 b.55.1.1 122412 3il6A 321 6.69e+01 2hw2A 143 6.73e+01 2cw3A 280 6.79e+01 2givA 295 6.82e+01 d.108.1.1 135253 2dulA 378 6.86e+01 c.66.1.58 146588 3lp5A 250 6.88e+01 3idzA 431 7.15e+01 1hk9A 74 7.23e+01 b.38.1.2 83541 1xpkC 388 7.27e+01 c.95.1.2,c.95.1.2 115747,115748 1h70A 255 7.29e+01 1h70A d.126.1.3 60711 1x05A 129 7.34e+01 b.55.1.1 121543 2i5fA 109 7.35e+01 b.55.1.1 147512 1mkyA 439 7.40e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2nutB 753 7.48e+01 1ig9A 903 7.52e+01 1clqA c.55.3.5,e.8.1.1 62367,62368 3i53A 332 7.59e+01 3e4wA 320 7.61e+01 1qg4A 216 7.62e+01 1byuA c.37.1.8 32035 1cy5A 97 7.76e+01 1cy5A a.77.1.3 18430 2je3A 186 7.81e+01 2cdcA 366 7.81e+01 1qjbA 245 7.82e+01 1qjaA a.118.7.1 19202 1a7j 290 7.90e+01 1a7j 1a7jA 290 7.90e+01 c.37.1.6 31952 1iu8A 206 7.91e+01 c.56.4.1 71436 1yd9A 193 7.98e+01 c.50.1.2 122976