# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ox7A 155 1.13e+00 b.172.1.1 149054 1i6wA 181 1.39e+00 1i6wA c.69.1.18 61859 3l6tA 302 1.99e+00 1ispA 181 2.12e+00 c.69.1.18 76778 3l57A 299 2.66e+00 2h1tA 188 2.83e+00 b.178.1.1 147215 2jzbB 74 2.99e+00 3dktA 265 3.18e+00 1kit 757 3.74e+00 1kit 1x12A 208 3.97e+00 3hurA 395 4.05e+00 1rblI 109 4.42e+00 d.73.1.1 118599 1w0pA 781 4.63e+00 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 3hveA 256 5.73e+00 3l8bA 906 5.86e+00 3lzjA 903 5.90e+00 2bszA 278 5.97e+00 d.3.1.5 129131 1ig9A 903 6.01e+00 1clqA c.55.3.5,e.8.1.1 62367,62368 3h93A 192 7.03e+00 1mjnA 179 7.17e+00 c.62.1.1 79210 3e8tA 220 7.33e+00 3sdhA 146 7.74e+00 3sdhA a.1.1.2 14984 3g46A 146 9.26e+00 1riwB 147 9.45e+00 1ucyH 150 9.78e+00 1ucyH 1vh0A 161 9.81e+00 c.116.1.3 100626 3gkuA 225 1.06e+01 2prvA 153 1.18e+01 d.369.1.1 149817 1rscI 111 1.22e+01 d.73.1.1 118620 1rsy 152 1.24e+01 1rsy 2remA 193 1.35e+01 3kphA 217 1.36e+01 2i6gA 199 1.36e+01 c.66.1.44 137096 1lfaA 187 1.46e+01 1ido c.62.1.1 34122 2q91A 101 1.47e+01 a.39.1.2 150135 1rsyA 152 1.50e+01 b.7.1.2 23192 1wdaA 670 1.51e+01 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 3fydA 263 1.61e+01 2k4qA 156 1.67e+01 3fblA 82 1.69e+01 2ii2A 310 1.70e+01 2rdpA 150 1.73e+01 2w2sA 202 1.81e+01 1i5gA 144 1.82e+01 1ewxA c.47.1.10 61784 3dv8A 220 1.87e+01 1pzlA 237 1.97e+01 a.123.1.1 104393 1rtwA 220 1.97e+01 a.132.1.3 97823 1kaeA 434 2.10e+01 c.82.1.2 72247 3h2bA 203 2.10e+01 2dchX 216 2.11e+01 2j6vA 301 2.12e+01 3m0wA 100 2.14e+01 3gruA 295 2.23e+01 1i0dA 332 2.23e+01 1pscA c.1.9.3 61487 1iu8A 206 2.24e+01 c.56.4.1 71436 2ob3A 330 2.31e+01 1xoyA 161 2.35e+01 b.18.1.26 115718 3fycA 265 2.35e+01 1y8oA 419 2.37e+01 a.29.5.1,d.122.1.4 144603,144604 1b0uA 262 2.39e+01 1b0uA c.37.1.12 32370 3c0qA 301 2.44e+01 3c1vA 113 2.49e+01 a.39.1.2 155867 3h5lA 419 2.53e+01 1gqeA 365 2.55e+01 e.38.1.1 70351 3k7mX 431 2.55e+01 2pkfA 334 2.55e+01 2hfxA 260 2.66e+01 3khkA 544 2.66e+01 1ukxA 137 2.71e+01 d.20.1.3 107919 3i4jA 430 2.76e+01 2fu2A 102 2.80e+01 1tffA 234 2.90e+01 d.3.1.11 106854 1qn2A 100 2.96e+01 1ycc a.3.1.1 15882 2dexX 671 3.00e+01 b.2.9.1,b.6.1.6,d.126.1.5 131436,131437,131438 3h92A 92 3.05e+01 1u6rA 380 3.11e+01 a.83.1.1,d.128.1.2 119600,119601 3ihkA 218 3.13e+01 3htvA 310 3.17e+01 1yo5C 97 3.22e+01 a.4.5.21 123768 1x2mA 64 3.24e+01 a.4.1.1 121645 2z8aA 146 3.32e+01 1ew4A 106 3.61e+01 1ew4A d.82.2.1 40023 3c86A 328 3.63e+01 3ibwA 88 3.66e+01 1yi8A 351 3.69e+01 2r7hA 177 3.80e+01 1fvkA 189 3.82e+01 1fvkA c.47.1.13 90351 1jr5A 90 3.88e+01 a.150.1.1 67113 2pmuA 110 3.89e+01 3a4jA 329 3.97e+01 2o7tA 199 4.00e+01 a.4.1.9,a.121.1.1 148670,148671 1bwvS 138 4.11e+01 1rboC d.73.1.1 39662 1lugA 259 4.16e+01 b.74.1.1 91127 3hk3B 258 4.17e+01 1g60A 260 4.23e+01 c.66.1.11 70151 1r03A 182 4.25e+01 a.25.1.1 104675 1dk8A 147 4.31e+01 1agrE a.91.1.1 18548 1z2lA 423 4.33e+01 c.56.5.4,d.58.19.1 124383,124384 1hd2A 161 4.45e+01 c.47.1.10 60962 1k75A 434 4.55e+01 c.82.1.2 68253 1l4dB 122 4.56e+01 d.15.5.1 77684 2cw1A 65 4.57e+01 k.46.1.1 130918 2ip2A 334 4.59e+01 1vioA 243 4.63e+01 d.265.1.3,d.66.1.5 100762,100763 2imiA 221 4.68e+01 3l9sA 191 4.81e+01 2amjA 204 4.94e+01 1hl2A 297 4.95e+01 c.1.10.1 83581 1xo5A 183 5.03e+01 a.39.1.5 115680 3hkjB 259 5.03e+01 1cbgA 490 5.08e+01 c.1.8.4 28933 1dptA 117 5.26e+01 1dptA d.80.1.3 39862 2f5xA 312 5.29e+01 3hs3A 277 5.31e+01 2pgbB 259 5.34e+01 1u3aA 189 5.43e+01 c.47.1.13 119504 2aj7A 163 5.47e+01 b.158.1.1 126842 2a1fA 247 5.48e+01 c.73.1.3 125991 1xnfA 275 5.52e+01 a.118.8.1 115580 2qhlA 111 5.54e+01 2qz7A 194 5.60e+01 1acvA 189 5.61e+01 1fvkA c.47.1.13 90328 1vrpA 381 5.62e+01 a.83.1.1,d.128.1.2 120473,120474 1fljA 260 5.62e+01 2cba b.74.1.1 27954 1r5iD 216 5.65e+01 a.202.1.1 97091 3bdiA 207 5.77e+01 2gagA 965 5.77e+01 1fmjA 351 5.82e+01 c.37.1.5 59879 1g63A 181 5.87e+01 1g5qA c.34.1.1 60299 1pu6A 218 5.87e+01 a.96.1.5 95123 3ks3A 260 5.94e+01 1fr7A 260 6.05e+01 2cba b.74.1.1 27828 1vzyA 291 6.07e+01 d.193.1.1,g.81.1.1 114042,114043 1uehA 253 6.07e+01 c.101.1.1 99259 2icwG 213 6.09e+01 a.202.1.1 137251 1uayA 242 6.09e+01 c.2.1.2 88390 1wz8A 264 6.16e+01 c.14.1.3 121483 2uufB 259 6.18e+01 1a6zA 275 6.23e+01 1agdA b.1.1.2,d.19.1.1 20781,38280 2v6uA 104 6.26e+01 2d2jA 329 6.35e+01 c.1.9.3 131175 2zndA 172 6.47e+01 3iayA 919 6.49e+01 2vl7A 540 6.50e+01 1g7dA 106 6.50e+01 1g7dA a.71.1.1 18318 1f60A 458 6.64e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 3dxtA 354 6.65e+01 2hy7A 406 6.67e+01 1d2fA 390 6.68e+01 1d2fA c.67.1.3 34411 2eeyA 162 6.68e+01 2wwjA 348 6.70e+01 3f04A 143 6.77e+01 2cjaA 522 6.82e+01 3mdxA 178 6.83e+01 1qlsA 99 6.87e+01 1psrA a.39.1.2 17185 2oaaA 249 6.92e+01 2bneA 241 6.93e+01 c.73.1.3 128824 1upvA 257 6.94e+01 a.123.1.1 113398 2j49A 148 6.94e+01 d.379.1.1 147870 3ie1A 431 6.97e+01 2ceyA 306 7.03e+01 1vlrA 350 7.07e+01 d.13.1.3,d.246.1.1 108860,108861 3ie0A 431 7.16e+01 3ikbA 198 7.19e+01 2a40B 260 7.31e+01 d.151.1.1 126139 1h2kA 349 7.32e+01 b.82.2.6 76572 1yo1A 260 7.44e+01 1dfoA 417 7.54e+01 1bj4A c.67.1.4 34480 3hihA 223 7.55e+01 2v3aA 384 7.55e+01 1xk4C 113 7.65e+01 a.39.1.2 122057 2gsqA 202 7.69e+01 a.45.1.1,c.47.1.5 17715,33009 3idzA 431 7.70e+01 1v4eA 299 7.86e+01 a.128.1.1 100296 1augA 215 7.88e+01 1a2zA c.56.4.1 33798 3ie2A 431 7.95e+01 1ovnA 248 7.95e+01 a.71.1.1,c.47.1.7 93602,93603