# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3gwfA 540 3.62e-01 3gkuA 225 7.05e-01 1ispA 181 1.06e+00 c.69.1.18 76778 2h1tA 188 1.07e+00 b.178.1.1 147215 3h5lA 419 1.25e+00 1i6wA 181 1.33e+00 1i6wA c.69.1.18 61859 1x12A 208 2.36e+00 1g8aA 227 2.96e+00 c.66.1.3 90506 3enbA 222 3.39e+00 c.55.3.14 158189 1ykjA 394 3.67e+00 c.3.1.2,d.16.1.2 145914,145915 1nn7A 105 3.86e+00 d.42.1.2 85894 3gwaA 365 4.19e+00 2r6oA 294 4.57e+00 3e8tA 220 5.08e+00 1pbe 394 5.29e+00 1pbe 1pbeA 394 5.29e+00 c.3.1.2,d.16.1.2 30338,37869 2hw2A 143 5.45e+00 1kcgC 178 6.44e+00 d.19.1.1 68440 1z2iA 358 6.56e+00 1q7fA 286 7.20e+00 b.68.9.1 96036 3l8bA 906 7.37e+00 1k0iA 394 7.53e+00 c.3.1.2,d.16.1.2 67942,67943 2q4vA 170 7.63e+00 d.108.1.1 139878 2cxxA 190 8.04e+00 c.37.1.8 131013 3lzjA 903 8.29e+00 1tljA 213 8.60e+00 d.282.1.1 107126 3bbjA 272 8.76e+00 2b33A 140 9.32e+00 d.79.1.1 127765 2obdA 476 9.39e+00 1pu1A 94 9.81e+00 d.266.1.1 104307 2nxpA 156 9.93e+00 d.379.1.1 148504 2pt7G 152 1.01e+01 2dexX 671 1.03e+01 b.2.9.1,b.6.1.6,d.126.1.5 131436,131437,131438 1aisB 200 1.05e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 2axqA 467 1.05e+01 3e9tA 114 1.15e+01 1kit 757 1.15e+01 1kit 1g60A 260 1.18e+01 c.66.1.11 70151 3bdqA 110 1.27e+01 3hv9A 265 1.27e+01 1cy5A 97 1.28e+01 1cy5A a.77.1.3 18430 1ig9A 903 1.29e+01 1clqA c.55.3.5,e.8.1.1 62367,62368 1wdaA 670 1.31e+01 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 2qztA 111 1.32e+01 2qzuA 491 1.34e+01 2zv3A 115 1.35e+01 1v9cA 218 1.36e+01 c.23.17.1 100533 3gqhA 163 1.47e+01 1qmyA 167 1.49e+01 1qmyA d.3.1.2 37094 1x3zA 335 1.50e+01 d.3.1.4 121673 1svsA 353 1.51e+01 c.37.1.8 106051 1b56A 135 1.53e+01 b.60.1.2 27183 1bolA 222 1.60e+01 1bolA d.124.1.1 41120 1yzhA 214 1.62e+01 c.66.1.53 124277 3cniA 156 1.63e+01 3hv8A 268 1.76e+01 3eeyA 197 1.82e+01 1xahA 354 1.89e+01 2i8dA 123 1.89e+01 d.198.4.1 147561 1rtwA 220 1.89e+01 a.132.1.3 97823 3f9sA 146 1.90e+01 1mkyA 439 1.94e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2hqlA 110 1.98e+01 3fsoA 123 1.99e+01 1w0pA 781 2.00e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2j6vA 301 2.00e+01 3eadA 137 2.01e+01 1g9gA 629 2.02e+01 a.102.1.2 83279 3biyA 380 2.06e+01 3lacA 215 2.08e+01 2dulA 378 2.12e+01 c.66.1.58 146588 2esnA 310 2.13e+01 a.4.5.37,c.94.1.1 132333,132334 2vh1A 220 2.15e+01 1jmmA 377 2.20e+01 b.30.6.1 71749 1hd2A 161 2.22e+01 c.47.1.10 60962 2ai4A 119 2.26e+01 b.6.1.7 126816 1hn4A 131 2.27e+01 a.133.1.2 65893 3f85A 463 2.29e+01 1g8lA 411 2.35e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1gyxA 76 2.36e+01 d.80.1.1 76387 1a7j 290 2.38e+01 1a7j 1a7jA 290 2.38e+01 c.37.1.6 31952 1fjgP 88 2.38e+01 1emwA d.27.1.1 38444 2w02A 620 2.43e+01 2nqrA 411 2.45e+01 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 3fz3A 531 2.46e+01 3duzA 487 2.48e+01 2ox7A 155 2.55e+01 b.172.1.1 149054 1ew4A 106 2.56e+01 1ew4A d.82.2.1 40023 1iu8A 206 2.59e+01 c.56.4.1 71436 1vbiA 344 2.62e+01 3c3vA 510 2.63e+01 2cxhA 217 2.64e+01 c.51.1.2 131005 2qkbA 154 2.70e+01 1iyeA 309 2.75e+01 e.17.1.1 83786 3go2A 409 2.76e+01 2zuyA 620 2.80e+01 1zupA 315 2.86e+01 c.55.3.11 125681 1nt2A 210 2.95e+01 c.66.1.3 86149 2oo6A 409 3.00e+01 1faeA 629 3.05e+01 1fce a.102.1.2 18837 2rhqB 795 3.11e+01 3kasA 640 3.12e+01 1vqoJ 145 3.22e+01 c.21.1.1 120371 2hk9A 275 3.27e+01 1lc0A 294 3.29e+01 c.2.1.3,d.81.1.4 73823,73824 3licA 274 3.30e+01 1vzqH 250 3.40e+01 1r03A 182 3.41e+01 a.25.1.1 104675 2cw3A 280 3.53e+01 2f4mA 295 3.60e+01 d.3.1.4 145135 2uubP 88 3.66e+01 d.27.1.1 139947 1ugjA 141 3.72e+01 b.41.1.3 107826 1cipA 353 3.74e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1h2iA 209 3.80e+01 d.50.1.3 76550 3ihkA 218 3.86e+01 1vmeA 410 3.87e+01 c.23.5.1,d.157.1.3 108893,108894 1gcuA 295 3.89e+01 1gcuA c.2.1.3,d.81.1.4 30063,39978 2z6cA 129 3.95e+01 2cdcA 366 4.07e+01 1q40B 219 4.11e+01 d.17.4.2 95771 2bvrH 252 4.17e+01 1ug8A 87 4.24e+01 d.68.7.1 107825 2wbsA 89 4.51e+01 2irfG 113 4.55e+01 2irfG a.4.5.23 16185 1xvwA 160 4.59e+01 c.47.1.10 122387 2jzfA 143 4.59e+01 1t7vA 278 4.59e+01 b.1.1.2,d.19.1.1 112302,112303 1lshB 319 4.61e+01 f.7.1.1 74245 3lpmA 259 4.63e+01 1riwB 147 4.64e+01 2vqeP 88 4.67e+01 i.1.1.1 153440 2bmeA 186 4.70e+01 c.37.1.8 128790 2qflA 267 4.74e+01 1u5xA 140 4.88e+01 b.22.1.1 113055 2qz7A 194 5.07e+01 1jnuA 104 5.20e+01 d.110.3.6 71762 3bkrA 126 5.32e+01 2i5fA 109 5.33e+01 b.55.1.1 147512 3bn0A 112 5.38e+01 d.27.1.1 155425 1oaqH 121 5.42e+01 b.1.1.1 92707 1zm0A 114 5.45e+01 b.55.1.1 125276 3ioxA 497 5.48e+01 1yqyA 523 5.51e+01 d.92.1.14,d.166.1.1 123903,123904 3k5sA 217 5.55e+01 2pgbB 259 5.62e+01 1rsy 152 5.65e+01 1rsy 1rsyA 152 5.65e+01 b.7.1.2 23192 3f04A 143 5.77e+01 1zr5A 214 5.77e+01 c.50.1.2 125525 3e6aA 336 5.78e+01 1otkA 249 5.78e+01 a.25.1.2 93521 1tqmA 282 5.90e+01 a.4.5.56,d.144.1.9 107236,107237 1wtjA 343 5.92e+01 3fleA 249 5.94e+01 1ff9A 450 5.95e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 2gdzA 267 6.02e+01 c.2.1.2 135043 2h58A 330 6.04e+01 2cf8H 257 6.08e+01 1u1sA 82 6.12e+01 b.38.1.2 119451 3lp5A 250 6.14e+01 3hihA 223 6.42e+01 3hikA 237 6.44e+01 2digA 68 6.45e+01 b.34.9.1 131529 1yroB 286 6.51e+01 c.68.1.2 123932 3fvhA 237 6.51e+01 2cvlA 124 6.51e+01 d.79.1.1 130871 2atrA 138 6.52e+01 d.108.1.1 127305 2d7vA 162 6.55e+01 d.227.1.1 146468 3c1qA 123 6.59e+01 1r1hA 696 6.60e+01 d.92.1.4 104756 2fy7A 287 6.64e+01 1oi4A 193 6.71e+01 c.23.16.2 144364 2vfkA 205 6.73e+01 1pztA 286 6.77e+01 c.68.1.2 95470 1psrA 100 6.77e+01 1psrA a.39.1.2 17180 1h6qA 168 6.77e+01 1h6qA b.88.1.2 60692 1nmmB 286 6.78e+01 c.68.1.2 80662 1fgxA 288 6.84e+01 1fgxA c.68.1.2 34508 3c3yA 237 6.84e+01 2qzbA 166 6.86e+01 2dpkA 152 6.89e+01 b.1.27.1 131616 2voaA 257 7.01e+01 2g6yA 217 7.01e+01 1t9hA 307 7.02e+01 b.40.4.5,c.37.1.8 112358,112359 3h1tA 590 7.03e+01 2wbuA 90 7.03e+01 1ydyA 356 7.04e+01 c.1.18.3 123006 1d5rA 324 7.05e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 2izpA 303 7.06e+01 a.250.1.1 137826 1s1dA 331 7.07e+01 b.67.3.1 98344 1pf5A 131 7.08e+01 d.79.1.1 94604 3ipkA 497 7.14e+01 2haiA 576 7.19e+01 2w36A 225 7.25e+01 2i4lA 458 7.25e+01 3h9eA 346 7.27e+01 3gwqA 426 7.29e+01 1qn2A 100 7.34e+01 1ycc a.3.1.1 15882 3bjoA 103 7.34e+01 2ostA 151 7.37e+01 1vbjA 281 7.40e+01 2cw8A 537 7.41e+01 1h8gA 95 7.51e+01 b.109.1.1 65735 1tiqA 180 7.52e+01 d.108.1.1 107010 3fo5A 258 7.53e+01 2q0iA 303 7.61e+01 d.157.1.14 149986 1h2eA 207 7.71e+01 c.60.1.1 70857 1mjnA 179 7.75e+01 c.62.1.1 79210 1wm1A 317 7.77e+01 c.69.1.7 109405 2uykA 129 7.79e+01 1ucyH 150 7.83e+01 1ucyH 1z2cB 383 7.87e+01 a.118.1.23 124377 1dkzA 219 7.90e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1t8qA 336 7.92e+01 c.1.18.3 106669