# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3sdhA 146 1.99e-01 3sdhA a.1.1.2 14984 3g46A 146 3.68e-01 2z8aA 146 9.75e-01 1prxA 224 1.62e+00 1prxA c.47.1.10 33076 1ispA 181 2.12e+00 c.69.1.18 76778 2ox7A 155 2.12e+00 b.172.1.1 149054 1i6wA 181 2.85e+00 1i6wA c.69.1.18 61859 2dchX 216 3.85e+00 3hurA 395 4.10e+00 2p5zX 491 4.62e+00 b.40.8.1,b.106.1.1,b.106.1.1 149263,149264,149265 1rtwA 220 5.45e+00 a.132.1.3 97823 1bwvS 138 6.22e+00 1rboC d.73.1.1 39662 3khkA 544 6.57e+00 2vt8A 153 7.85e+00 1xccA 220 7.98e+00 c.47.1.10 115113 2ae6A 166 9.06e+00 d.108.1.1 126600 2h1tA 188 9.26e+00 b.178.1.1 147215 2w2gA 264 9.45e+00 3l0wB 169 1.14e+01 1mhqA 148 1.15e+01 a.118.9.2 84973 2prvA 153 1.16e+01 d.369.1.1 149817 3hveA 256 1.20e+01 3ktdA 341 1.39e+01 3hs3A 277 1.41e+01 1t6gC 184 1.44e+01 b.29.1.11 106569 1w6uA 302 1.48e+01 c.2.1.2 114288 2jzdA 129 2.01e+01 3blnA 143 2.03e+01 1i5gA 144 2.08e+01 1ewxA c.47.1.10 61784 2h36X 112 2.13e+01 1jipA 403 2.15e+01 a.104.1.1 66748 1lb3A 182 2.15e+01 a.25.1.1 77873 2vs0A 97 2.16e+01 1x12A 208 2.19e+01 2k4qA 156 2.24e+01 2v4cA 309 2.28e+01 3fycA 265 2.34e+01 1i0dA 332 2.43e+01 1pscA c.1.9.3 61487 1qsmA 152 2.47e+01 1qsmA d.108.1.1 40808 3iv4A 112 2.62e+01 2ostA 151 2.79e+01 1kypA 237 2.81e+01 d.22.1.1 73280 2jzfA 143 2.89e+01 1c4zA 358 2.89e+01 1c4zA d.148.1.1 41766 1knxA 312 2.94e+01 c.98.2.1,c.91.1.2 77459,77460 1b0nA 111 2.94e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1fy7A 278 2.99e+01 1fy7A d.108.1.1 40817 3h92A 92 3.09e+01 3h0lC 94 3.19e+01 3l5jA 288 3.22e+01 3c1qA 123 3.24e+01 2ob3A 330 3.27e+01 3h35A 185 3.31e+01 2r60A 499 3.43e+01 1q0pA 223 3.45e+01 c.62.1.1 95507 2zcmA 192 3.49e+01 1e8oB 106 3.50e+01 1914 d.49.1.1 38775 1on0A 158 3.56e+01 d.108.1.1 87095 1xm5A 155 3.58e+01 d.92.1.15 115467 2w2sA 202 3.61e+01 2imfA 203 3.80e+01 2fbqA 235 3.82e+01 a.4.1.9,a.121.1.1 133256,133257 1epuA 591 3.91e+01 1dn1A e.25.1.1 43358 1gp1A 198 3.95e+01 1gp1A c.47.1.10 33059 2r1iA 172 4.01e+01 1co6A 107 4.07e+01 1ycc a.3.1.1 15894 3ihkA 218 4.12e+01 3b50A 310 4.19e+01 1ema 236 4.26e+01 1ema 2hx6A 153 4.28e+01 2awfA 172 4.33e+01 d.20.1.1 127432 2pe8A 105 4.33e+01 2rd7A 367 4.35e+01 1vioA 243 4.41e+01 d.265.1.3,d.66.1.5 100762,100763 2oaaA 249 4.41e+01 2bszA 278 4.55e+01 d.3.1.5 129131 1aa7A 158 4.56e+01 1aa7A a.95.1.1 18741 1qsoA 149 4.65e+01 1qsmA d.108.1.1 40812 2vpuA 354 4.66e+01 1lugA 259 4.70e+01 b.74.1.1 91127 2pr1A 163 4.78e+01 1rz4A 226 4.80e+01 a.4.5.53,a.118.1.18 105131,105132 2hzdA 82 4.94e+01 1eupA 403 4.99e+01 1rom a.104.1.1 18967 2jzbB 74 5.01e+01 2rdpA 150 5.04e+01 2o08A 188 5.07e+01 3ks3A 260 5.17e+01 1fr7A 260 5.20e+01 2cba b.74.1.1 27828 2khaA 130 5.35e+01 2rk9A 145 5.43e+01 1tuc 63 5.44e+01 1tuc 1yo1A 260 5.51e+01 2pmuA 110 5.58e+01 1iu8A 206 5.60e+01 c.56.4.1 71436 2pdoA 144 5.63e+01 1g60A 260 5.72e+01 c.66.1.11 70151 1wy1A 172 5.73e+01 2ii2A 310 5.76e+01 1nigA 152 5.77e+01 a.25.2.1 85740 3djwA 99 5.79e+01 2dnjA 260 5.88e+01 3dni d.151.1.1 41790 2hfxA 260 5.97e+01 1zbfA 142 5.98e+01 c.55.3.1 124850 1z8oA 404 6.02e+01 a.104.1.1 124722 2jkgA 179 6.05e+01 3fe4A 278 6.31e+01 3dni 260 6.35e+01 3dni 3lm8A 222 6.37e+01 2iyvA 184 6.39e+01 c.37.1.2 137812 2fe7A 166 6.48e+01 d.108.1.1 133325 3dktA 265 6.51e+01 1puzA 82 6.52e+01 a.218.1.1 104320 1riwB 147 6.57e+01 3ix9A 190 6.66e+01 1q52A 314 6.71e+01 c.14.1.3 95846 3eeyA 197 6.79e+01 1a0rP 245 6.81e+01 1b9yC c.47.1.6 33054 1wtjA 343 6.91e+01 2ceyA 306 6.98e+01 2qt1A 207 7.00e+01 2i6gA 199 7.10e+01 c.66.1.44 137096 2j41A 207 7.25e+01 3dmcA 134 7.44e+01 d.17.4.10 157805 1pzlA 237 7.47e+01 a.123.1.1 104393 1ib2A 349 7.58e+01 1ib2A a.118.1.8 62141 1wz8A 264 7.65e+01 c.14.1.3 121483 1wnaA 131 7.69e+01 d.319.1.1 121091 1ucyH 150 7.75e+01 1ucyH 2iccA 119 7.84e+01 1qn2A 100 7.99e+01 1ycc a.3.1.1 15882