PFRMAT SS
TARGET T0578
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0578.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 28
METHOD
MODEL 1
S C 0.722
N H 0.733
A H 0.819
M H 0.857
K H 0.821
K H 0.765
A H 0.682
T C 0.686
M H 0.614
L H 0.870
T H 0.931
Y H 0.967
L H 0.981
E H 0.989
E H 0.984
Q H 0.971
L H 0.948
E H 0.833
K H 0.706
H H 0.367
L C 0.402
G C 0.523
D C 0.646
Y C 0.653
E E 0.386
V E 0.581
G E 0.758
L E 0.624
D E 0.470
W T 0.347
D T 0.417
R T 0.810
K T 0.821
N T 0.874
H T 0.566
T E 0.636
I E 0.937
E E 0.959
V E 0.970
I E 0.987
V E 0.978
R E 0.981
L E 0.975
Y E 0.967
A E 0.953
E E 0.927
N E 0.592
N T 0.863
E T 0.902
Q T 0.567
V E 0.836
A E 0.945
I E 0.958
D E 0.934
D E 0.791
V T 0.438
D T 0.571
G T 0.497
T E 0.409
L E 0.385
S T 0.387
E T 0.695
E T 0.782
E T 0.630
F C 0.388
I E 0.625
E E 0.756
F E 0.569
E T 0.420
D T 0.386
G E 0.684
L E 0.846
L E 0.885
F E 0.782
Y C 0.439
N T 0.613
P T 0.764
Q T 0.710
K T 0.572
S C 0.451
V C 0.413
V C 0.372
D T 0.521
D T 0.569
E T 0.646
E T 0.691
Y E 0.514
L E 0.760
V E 0.910
T E 0.935
I E 0.868
P E 0.670
Y C 0.490
E C 0.543
G C 0.530
K T 0.600
K T 0.623
G T 0.528
L C 0.453
R C 0.763
K H 0.974
A H 0.986
V H 0.994
L H 0.999
D H 0.999
G H 0.999
F H 0.999
I H 1.000
H H 0.999
Y H 0.999
L H 0.999
K H 0.999
V H 0.998
V H 0.998
L H 0.991
D H 0.981
E H 0.918
G C 0.678
Q H 0.554
S H 0.589
D H 0.538
L H 0.744
L H 0.754
D H 0.835
F H 0.563
L H 0.386
S C 0.465
D T 0.498
E T 0.530
T T 0.504
A T 0.494
E C 0.335
V E 0.812
F E 0.940
E E 0.950
L E 0.959
H E 0.886
W C 0.479
E C 0.804
P H 0.851
A H 0.929
D H 0.931
F H 0.970
E H 0.977
A H 0.959
M H 0.938
I H 0.926
K H 0.895
K H 0.865
V H 0.744
A H 0.766
E H 0.750
T H 0.577
E H 0.556
K C 0.455
E C 0.457
Q C 0.468
W C 0.591
I C 0.674
A C 0.787
Y C 0.742
P C 0.767
S C 0.825
Y C 0.982
END