a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0576
- gi|124515102|gb|EAY56613.1|_2:147 protein of unknown function [Leptospirillum rubarum]
- gi|206603776|gb|EDZ40256.1|_2:147 Protein of unknown function [Leptospirillum sp. Group II '5-way CG']

              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MGSSHHHHHHSSGRENLYFQGHVEPGVTDRIGQMILEMFRTGMCLFSVRSPGGVAELYGGEARKV
   2 -----------------------EPGVTDRIGQMILEMFRTGMCLFSVRSPGGVAELYGGEARKV
   3 -----------------------DSKVTDRIGTMILEMFRSGMCLFSVRSPGSVAELYGGEARKV


         70        80        90       100       110       120       130
         |         |         |         |         |         |         |
   1 EITGTSLTIEREDWHLHCKLETVETVVFDLSPKDNGGIRMAVVFRDKHQAPVLRAAWLPRLMPET
   2 EITGTSLTIEREDWHLHCKLETVETVVFDLSPKDNGGIRMAVVFRDKHQAPVLRAAWLPRLMPET
   3 DVSGTSLTIEREAWHLHCRLETVETVVFDLSPKENGGIRMAVVFQDKHQVPVLRAAWLPRLMPDT


             140       150       160       170  
              |         |         |         |  
   1 PSPPEQFWAFTQRYIDLPMVVDARNRQLVFPGSGQGGFTEGS
   2 PSPPEQFWAFTQRYIDLPMVVDARNRQLVFPGSGQGGFT---
   3 PSPPEQFWAFTQRYIDLPVVVDARNRQLVSPGSGQGDSS---