# List of top-scoring protein chains for T0576.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3cpsA 354 3.738 1y8aA 332 6.189 c.108.1.24 145913 2fgcA 193 6.276 d.58.18.6,d.58.18.6 133428,133429 2b94A 267 6.968 1pbtA 244 10.69 c.124.1.1 94416 3isuA 121 11.91 2evvA 207 14.31 3is5A 285 14.70 1tviA 172 15.07 d.92.1.15 112684 2g8yA 385 15.23 2gfqA 298 15.28 c.56.7.1 135106 2qpvA 156 15.83 d.129.3.8 151215 2fgxA 107 16.94 2belA 283 18.27 c.2.1.2 116694 3fxhA 135 19.16 1z6zA 282 19.24 c.2.1.2 124575 2hgaA 125 19.81 b.36.1.6 147282 3eo2A 231 20.14 1yb1A 272 22.53 c.2.1.2 116599 2k5hA 101 23.41 3eo3A 333 23.58 3ec7A 357 24.07 2hfqA 109 24.32 d.375.1.1 147278 3ju1A 407 24.37 2kkuA 161 24.41 2q05A 195 24.59 2r6oA 294 24.85 2jq4A 105 25.05 a.28.1.1 148170 2f6iA 215 25.09 c.14.1.1 133040 1rwuA 109 25.96 d.58.54.1 111955 2nnzA 153 26.23 3lijA 494 26.33 1tjnA 156 26.48 c.92.1.3 107048 2ozvA 260 26.51 2r2oA 138 26.54 1td5A 202 26.68 d.110.2.2 106767 1tf1A 198 26.74 d.110.2.2 106826 3borA 237 27.14 1z1sA 163 27.28 d.17.4.10 145958 3bkpA 232 27.54 2guhA 214 28.06 2grgA 120 28.57 d.110.10.1 147159 2fsrA 195 28.63 d.108.1.1 134036 3jzyA 510 28.73 3erpA 353 28.83 1k7kA 221 29.03 c.51.4.1 72104 3f0nA 414 29.06 3iugA 229 29.53 2keoA 112 29.64 1xg5A 279 30.04 c.2.1.2 115277 1y88A 199 30.11 a.60.4.3,c.52.1.30 116560,116561 2bddA 182 30.30 2i6hA 207 30.56 a.118.8.5 147528 2hg6A 128 30.57 d.364.1.1 147280 1njkA 156 30.99 d.38.1.1 85818 3drwA 474 31.07 1u2xA 474 31.18 c.72.1.3 107622 3hilA 82 31.47 3eozA 214 31.49 3dz8A 191 31.61 2qkoA 215 31.78 2rbcA 343 32.06 3c5hA 255 32.34 3f6vA 151 32.91 1zbqA 327 32.94 c.2.1.2 124862 1p9qC 256 32.98 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 2rahA 378 33.45 2poeA 185 33.62 3h80A 231 33.73 2c43A 323 33.81 2cg5A 319 33.90 2js3A 96 34.06 1p8cA 145 34.10 a.152.1.2 94354 3lvyA 207 34.20 3cp6A 376 34.23 2weiA 287 34.42 3dfaA 286 34.43 1ywuA 149 34.75 b.45.2.1 124164 2q0vA 156 34.84 3fm8A 124 34.87 3gemA 260 34.88 2o9xA 181 34.95 a.184.1.1 148689 2hxiA 241 35.05 3e95C 158 35.09 2joiA 118 35.29 3igoA 486 35.48 1yv5A 374 35.50 2qisA 374 35.51 3gftA 187 35.77 2poyA 186 36.18 3kuzA 126 36.30 3h8mA 90 36.31 2i3dA 249 36.48 c.69.1.36 147499 3he1A 195 36.55 3conA 190 36.63 1u83A 276 36.96 c.1.27.1 107732 2id3A 225 37.12 a.4.1.9,a.121.1.1 137261,137262 3e74A 473 37.15 1zx3A 122 37.54 a.43.1.6 125762 2p82A 355 37.54 d.3.1.22 149300 2f6sA 201 38.03 a.265.1.1 133058 3kkaC 86 38.95 3kh0A 140 39.46 2qngA 199 39.55 3c07A 273 40.34 a.4.1.9,a.121.1.1 155807,155808 1nc7A 138 40.81 b.123.1.1 85549 2qg5A 294 40.85 2bujA 317 40.86 3lx7A 174 41.02 2jpiA 118 41.17 3k21A 191 41.19 2qkrA 313 41.24 3kyeA 150 41.45 3fynA 176 41.48 3ez3A 396 41.56 3kuqA 228 42.11 3m92A 107 42.32 2abyA 146 42.55 2asyA 123 42.65 d.58.4.12 127278 3hjcA 444 42.66 3l19A 214 43.00 3eetA 272 43.17 3fkmX 166 43.41 3fm8C 392 43.65 3khdA 520 43.97 3l43A 319 44.02 2kjzA 144 44.05 3dxnA 287 44.35 3cxlA 463 44.41 2kdnA 108 44.47 2r8wA 332 44.50 3mfnA 157 44.53 2h1rA 299 44.65 2or0A 414 44.81 3e9qA 273 45.21 2q58A 368 45.54 2aliA 158 45.54 d.38.1.1 126976 2hfvA 97 45.62 d.58.5.5 147279 3kkwA 182 45.99 3lxxA 239 46.74 3fg8A 118 46.90 3kulA 325 47.21 3kulB 325 47.38 3cxgA 133 47.51 3ihwA 184 47.56 3bniA 229 47.57 3fehA 386 47.80 2ekgA 327 48.15 2igtA 332 48.26 c.66.1.51 137401 2g37A 327 48.85 3cbqA 195 49.87 1zsxA 347 50.14 2pmyA 91 50.69 2aklA 138 50.78 b.34.11.2,g.41.3.5 126917,126918 3efzA 268 51.17 a.118.7.1 158144 3lluA 196 51.19 2nq3A 173 51.26 b.7.1.1 138452 3iezA 114 51.70 3fk2A 246 52.18 3kvgA 400 52.40 2hmcA 344 52.59 1t2aA 375 53.33 c.2.1.2 99078 3l46A 112 53.90 3mavA 395 53.99 2omoA 124 54.24 d.58.4.11 148871 2kr1A 82 54.29 3lxwA 247 54.54 2ki8A 146 54.67 3mleA 242 56.25 3dedA 113 57.07 d.145.1.4 157567 2of7A 260 57.37 3g1nA 388 57.93 2i71A 400 58.11 e.72.1.1 147531 3f4aA 169 58.31 3epzA 268 58.89 3gf9A 295 59.25 3c5cA 187 59.87 3fhmA 165 60.11 2bb3A 221 60.83 c.90.1.1 128257 3h5zA 438 60.97 2wsaA 438 61.00 2b69A 343 61.29 c.2.1.2 127974 2k1bA 73 61.92 3h1nA 252 63.15 2q2fA 89 63.62 3lzkA 359 63.87 3bfnA 379 64.69 3hkoA 345 65.62 3fiwA 211 65.93 2klcA 101 66.64 3gg8A 511 67.86 2kdbA 99 69.94 3i3gA 161 70.04 1rcuA 195 71.76 c.129.1.1 97295 3dzxA 346 72.13 3ll4A 292 72.60 3eapA 271 73.93 3lg2A 292 74.13 2f57A 317 74.28 2r77A 205 74.67 3dloA 155 75.79 3jrtA 192 75.99 3ledA 392 77.11 3b6vA 395 77.60 3dciA 232 78.40 2r6uA 148 78.74 2iaiA 230 78.80 3dkmA 89 79.85 3f5rA 191 79.98 2pwqA 216 81.28 2r6iA 284 81.38 d.381.1.1 151612 3e8xA 236 81.65 2k7iA 83 82.32 d.348.1.1 148278 2ayvA 166 83.31 d.20.1.1 127572 3iedA 272 84.26 2qu8A 228 84.86 2fbnA 198 85.62 a.118.8.1 133254 3fuyA 179 86.41 3movA 95 86.59 2qfzA 345 86.69 1ktdA 182 88.43 b.1.1.2,d.19.1.1 72964,72965 1r5vA 180 89.02 b.1.1.2,d.19.1.1 97116,97117 2qniA 219 89.10 1kt2A 182 89.17 b.1.1.2,d.19.1.1 72951,72952