# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hq2A	354	0.8182	e.62.1.1	136656
2j0pA	345	1.076	e.62.1.1	137903
3fm2A	135	1.139		
1u9tA	354	1.488	e.62.1.1	119651
2ph0A	174	3.475		
1r2jA	366	11.91	a.29.3.1,e.6.1.1	96869,96870
2waaA	347	11.96		
1wbiA	129	16.74		
3hm0A	167	20.04		
3m33A	226	20.96		
2w3xA	147	21.28		
1s5uA	138	23.79	d.38.1.1	98573
3d59A	383	34.43		
1u9aA	160	38.79	d.20.1.1	38333
1iciA	256	39.87	c.31.1.5	62266
2p13A	90	42.30	d.145.1.4	149152
3e15A	312	44.41		
2qikA	285	47.29		
3cu3A	172	52.38	d.17.4.28	156988
1ogpA	393	52.78	b.1.18.6,d.176.1.1	92927,92928
2pii	112	59.63		
2hqvA	195	61.55	e.62.1.2	136674
3c7fA	487	63.50		
3hg9A	131	76.21		
2waoA	341	80.67		
2p4pA	86	83.86	d.145.1.4	149217
2pliA	91	84.92	d.145.1.4	149630