# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3fm2A 135 0.4206 1ne7A 289 2.876 c.124.1.1 91833 1wbiA 129 3.991 3c7fA 487 4.117 2ph0A 174 4.161 2qdfA 335 4.506 1iciA 256 6.023 c.31.1.5 62266 2whmA 385 6.095 1m2tB 263 7.941 b.42.2.1,b.42.2.1 84762,84763 1e9rA 437 8.291 c.37.1.11 64827 2i5iA 263 9.510 c.6.2.8 147514 1fs5A 266 9.99 c.124.1.1 65044 1jmmA 377 11.03 b.30.6.1 71749 3mfbA 157 15.26 2a2cA 478 15.71 3gwaA 365 16.01 1gvzA 237 16.38 b.47.1.2 76360 1kxrA 339 16.84 d.3.1.3 73175 1kl1A 419 16.93 c.67.1.4 72663 2r2jA 382 17.64 1a8d 452 17.82 1odzA 386 17.87 c.1.8.3 86889 2xb2A 411 19.67 3hm0A 167 19.87 2j0eA 266 21.19 2hq2A 354 21.99 e.62.1.1 136656 1sr4A 206 22.69 b.42.2.1 105948 1gkkA 297 22.91 c.69.1.2 65248 2v1xA 591 23.05 3eb9A 266 23.66 3e7fA 265 23.96 2w3xA 147 24.47 1eejA 216 25.85 c.47.1.9,d.17.3.1 33057,38071 1ii2A 524 26.06 c.91.1.1,c.109.1.1 66146,66147 2pz4A 239 27.76 2hzbA 333 28.73 c.143.1.1 136911 1s5uA 138 28.85 d.38.1.1 98573 1yf3A 259 28.88 c.66.1.28 123046 3i5xA 563 29.15 3k1tA 432 29.24 3d59A 383 30.38 3ioxA 497 30.97 1s1mA 545 30.97 c.23.16.1,c.37.1.10 105201,105202 1auoA 218 32.78 c.69.1.14 34716 3k0mA 165 33.25 1j9yA 385 33.89 c.1.8.3 62791 2fp3A 316 34.27 2uwgA 171 36.25 3ipkA 497 36.68 2pii 112 37.44 1ti6A 875 37.85 b.52.2.2,c.81.1.1 106974,106975 1gox 370 38.67 1t3bA 211 40.35 c.47.1.9,d.17.3.1 106341,106342 2vbaA 406 40.62 c.95.1.1,c.95.1.1 152897,152898 1to6A 371 40.97 c.141.1.1 107170 3hg9A 131 41.25 2z8gA 549 41.85 1y08A 323 48.18 d.3.1.12 116280 2h5gA 463 48.82 1u9aA 160 50.16 d.20.1.1 38333 2blfA 373 50.17 1qwzA 235 51.60 b.100.1.1 96510 2hqvA 195 52.20 e.62.1.2 136674 2b4yA 271 52.23 c.31.1.5 127868 1gl6A 436 54.98 c.37.1.11 70259 1r9dA 787 55.70 c.7.1.1 104865 2hkdA 320 55.94 2w20A 471 58.95 1vluA 468 59.37 c.82.1.1 108864 2fywA 267 59.85 c.135.1.1 134408 1sw2A 275 62.23 c.94.1.1 106064 2oajA 902 62.95 2cmgA 262 63.24 1aw2A 256 63.40 c.1.1.1 28523 1q1aA 289 64.82 c.31.1.5 95561 1wkbA 810 66.38 3a11A 338 67.11 3evzA 230 67.43 3iylW 1299 67.89 1jqiA 388 69.94 a.29.3.1,e.6.1.1 67087,67088 2iutA 574 70.48 1w2wB 191 71.51 2p13A 90 71.85 d.145.1.4 149152 2zxeA 1028 73.49 3lkbA 392 74.94 3mdeA 385 75.71 a.29.3.1,e.6.1.1 16594,42855 1xfdA 723 76.70 b.70.3.1,c.69.1.24 115251,115252 1k07A 263 77.79 d.157.1.1 77218 1at0A 145 79.72 b.86.1.1 28374 1mdbA 539 80.75 e.23.1.1 79008 3b93A 133 80.86 b.22.1.1 154987 3m0oA 389 81.18 2plsA 86 83.21 d.145.1.4 149638 2a9dA 372 83.73 b.1.18.6,d.176.1.1 126431,126432 1o7fA 469 84.17 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2jdxA 385 84.49 d.126.1.2 41139 1skyE 473 84.72 a.69.1.1,b.49.1.1,c.37.1.11 18314,26479,32359 3icoA 268 84.76 1r2jA 366 85.15 a.29.3.1,e.6.1.1 96869,96870 1fn9A 365 88.06 d.196.1.1 59894 2hx0A 154 89.16 d.290.1.3 136830