# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hq2A	354	1.081	e.62.1.1	136656
2j0pA	345	1.144	e.62.1.1	137903
1u9tA	354	1.705	e.62.1.1	119651
3fm2A	135	5.552		
2ph0A	174	9.99		
1r2jA	366	10.74	a.29.3.1,e.6.1.1	96869,96870
3m33A	226	18.23		
3d59A	383	51.52		
1wbiA	129	55.05		
3isxA	343	57.39		
3lkbA	392	59.55		
3c7fA	487	64.53		
2qcuA	501	68.63		
1ogpA	393	70.78	b.1.18.6,d.176.1.1	92927,92928
1m2rA	327	71.01	d.144.1.7	84760
1ne8A	117	82.60	b.34.6.2	80424
2e9yA	316	84.91		
2a9dA	372	85.94	b.1.18.6,d.176.1.1	126431,126432
1txlA	215	88.62	b.60.1.4	107429
1u9aA	160	89.14	d.20.1.1	38333