# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u9tA	354	0.05717	e.62.1.1	119651
2j0pA	345	0.3289	e.62.1.1	137903
2hqvA	195	0.7040	e.62.1.2	136674
2ph0A	174	1.406		
2hq2A	354	1.948	e.62.1.1	136656
3fm2A	135	5.816		
2v95A	371	11.80		
1t5hX	504	13.79	e.23.1.1	106449
1a7cA	379	14.68	e.1.1.1	42660
3mcqA	319	15.01		
2i1yA	301	15.30		
3kcgI	432	17.66		
3b9fI	395	18.00		
1xdfA	157	18.04	d.129.3.1	121868
2e7vA	121	18.81		
3e3pA	360	19.48		
2ol2A	395	24.55		
2jkgA	179	29.37		
2pd8A	149	31.44		
2fz0A	149	31.98		
3fgqA	397	33.63		
2b5tI	432	34.44	e.1.1.1	127905
3iicA	155	35.42		
1lci	550	36.76		
1mdbA	539	37.09	e.23.1.1	79008
3kdhA	190	37.21		
1lj5A	379	37.30	e.1.1.1	73928
1wz9A	375	39.60		
1ro5A	201	42.69	d.108.1.3	105023
1db2A	377	44.03	e.1.1.1	42672
1qlpA	394	44.98	e.1.1.1	42628
1p27B	106	45.24	d.58.7.1	93908
3hx8A	129	45.61		
1x7vA	99	47.69	d.58.4.11	109501
1kafA	108	48.07	d.199.1.1	68372
3h2uB	283	49.59		
1tu1A	148	50.34	d.107.1.3	107316
2pdrA	149	50.65		
1uhgA	385	51.06	e.1.1.1	88491
1lenA	181	51.32	b.29.1.1	24032
1zc0A	309	52.46		
2r47A	157	53.51		
3e1tA	512	53.98		
3eatX	293	57.09		
2furA	209	57.86	b.45.1.1	134185
1squA	155	58.38	d.252.1.1	98971
2gj3A	120	58.94		
1ifqA	138	62.20	d.110.4.1	62350
2heuA	401	64.23		
3ivlA	208	65.21		
3mjqA	126	65.99		
3hucA	360	66.78		
3byvA	377	68.12		
3nulA	130	68.13	d.110.1.1	40891
1x0oA	119	68.14		
2v2gA	233	68.88		
2ox0A	381	70.26		
2pzzA	147	71.96	d.77.1.2	149977
3mdeA	385	73.60	a.29.3.1,e.6.1.1	16594,42855
3fv5A	201	73.72		
3eljA	369	74.61		
2w1zA	368	77.47		
1a9xB	379	78.13	c.8.3.1,c.23.16.1	30732,31409
3d72A	149	78.58		
2z2mC	125	81.22	d.11.1.1,d.11.1.1	153944,153945
3lq9A	134	81.90		
1pg4A	652	82.35	e.23.1.1	88067
1imvA	398	85.26	e.1.1.1	62591
2rhqB	795	85.85		
1ujrA	110	86.68	d.289.1.1	113258