# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3fg8A	118	3.886		
2ph0A	174	5.245		
2hqvA	195	14.07	e.62.1.2	136674
2aioA	269	15.33	d.157.1.1	126829
3cnmA	185	16.54		
2kkuA	161	16.94		
1y12A	165	17.04	b.157.1.1	122516
2nwaA	88	19.02	b.122.1.13	148480
2wntA	330	19.12		
1ni5A	433	20.86	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
2it2A	200	21.32		
3guaA	217	22.18		
1mdoA	393	24.21	c.67.1.4	79013
1pxvA	183	24.62	d.3.1.1	95301
1j6qA	136	25.27	b.40.9.1	77091
2f1nA	262	25.50	d.151.1.1	132782
1yizA	429	27.29	c.67.1.1	123375
2xahA	852	27.54		
2vvmA	495	27.99		
3goyA	193	29.03		
3ff0A	163	31.18		
2d29A	387	34.01	a.29.3.1,e.6.1.1	131157,131158
1t61A	229	36.09	d.169.1.6,d.169.1.6	106529,106530
2hx0A	154	36.71	d.290.1.3	136830
3ikjA	588	36.78		
1e0cA	271	40.26	c.46.1.2,c.46.1.2	32717,32718
1ybyA	215	40.28		
2w7tA	273	41.60		
2a40B	260	42.28	d.151.1.1	126139
2czlA	272	43.05	c.94.1.1	131055
1sr3A	136	43.07	b.40.9.1	98976
2ns1B	116	45.99	d.58.5.1	145694
1t61C	227	48.83	d.169.1.6,d.169.1.6	106533,106534
3dbgA	467	50.55		
3k8rA	124	50.64		
2odtX	328	52.16		
1pieA	419	52.41	d.14.1.5,d.58.26.7	94706,94707
2otnA	308	54.31		
1pbuA	162	57.40	d.58.46.1	88030
2p6yA	142	58.78		
3giwA	277	59.17		
3jrsA	208	59.79		
3idaA	587	60.63		
2hhgA	139	63.13		
2bgcA	238	63.36	a.4.5.4,b.82.3.3	128458,128459
1efvB	255	63.60	c.26.2.3	31634
3gpuA	256	63.61		
2khaA	130	67.64		
2j9cA	119	68.39		
1w7lA	422	68.97	c.67.1.1	109226
2qnkA	286	69.28		
2gvkA	317	69.80	d.58.4.14	135782
1y8cA	246	69.90	c.66.1.43	116563
3bpzA	202	70.19		
3kdhA	190	70.23		
2pii	112	70.50		
1vl4A	447	71.35	d.283.1.1	108718
2vouA	397	77.11	c.3.1.2,d.16.1.2	153389,153390
3i94A	248	77.19		
3claA	213	77.84	c.43.1.1	32610
2waaA	347	77.93		
2hq2A	354	78.33	e.62.1.1	136656
3cssA	267	78.97		
3b8xA	390	79.40		
3mhkA	223	83.03		
3k3kA	211	83.22		
1vfjA	116	83.31	d.58.5.1	113637
3fojA	100	83.72		
3fm2A	135	84.09		
3jrqB	186	84.17		
2drvA	200	84.39		
1gyhA	318	85.49	b.67.2.1	70757
2x00D	227	86.08		
2hdzA	91	87.63		
2dxnA	274	87.74	d.159.1.11	146605
1gmxA	108	88.02	c.46.1.3	65355
3mddA	385	88.25	a.29.3.1,e.6.1.1	16592,42853