# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ph0A	174	3.416		
3fg8A	118	7.005		
2hqvA	195	9.436	e.62.1.2	136674
3guaA	217	9.874		
1ybyA	215	15.41		
2x00D	227	17.31		
1y12A	165	18.46	b.157.1.1	122516
2d29A	387	18.59	a.29.3.1,e.6.1.1	131157,131158
2kkuA	161	19.05		
2j0pA	345	19.71	e.62.1.1	137903
1ni5A	433	19.86	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
2wntA	330	21.31		
2nwaA	88	22.97	b.122.1.13	148480
3cnmA	185	26.97		
1pieA	419	27.56	d.14.1.5,d.58.26.7	94706,94707
3jrsA	208	28.39		
2czlA	272	32.39	c.94.1.1	131055
2wn9A	228	32.74		
2f1nA	262	33.80	d.151.1.1	132782
1iwlA	182	35.71	b.125.1.1	83757
1sawA	225	36.00	d.177.1.1	112050
2aioA	269	36.01	d.157.1.1	126829
1mdoA	393	36.67	c.67.1.4	79013
2qfdA	145	36.70		
1gyhA	318	37.87	b.67.2.1	70757
2ns1B	116	38.56	d.58.5.1	145694
3goyA	193	38.94		
1pxvA	183	39.73	d.3.1.1	95301
2pw0A	397	40.14		
1nkqA	259	41.22	d.177.1.1	103862
1wzoA	246	41.40		
2hq2A	354	41.76	e.62.1.1	136656
3ff0A	163	43.22		
3kdhA	190	44.44		
2khaA	130	45.43		
2hx0A	154	46.44	d.290.1.3	136830
2waaA	347	49.87		
3jrqB	186	49.90		
1j6qA	136	51.41	b.40.9.1	77091
3gpuA	256	51.92		
2w7tA	273	52.43		
1sr3A	136	52.61	b.40.9.1	98976
2yr5A	721	57.44		
1si2A	149	62.15	b.34.14.1	105569
3kdjA	202	69.69		
2vvmA	495	71.54		
1u9tA	354	74.56	e.62.1.1	119651
2pii	112	74.79		
1q23A	219	74.87	c.43.1.1	104481
3dv9A	247	77.55		
2o0jA	385	77.83		
1ehxA	94	80.25	b.1.18.13	21950
2aukA	190	81.14		
3claA	213	81.71	c.43.1.1	32610
2odtX	328	81.82		
3giwA	277	82.42		
3k3kA	211	84.32		
1e0cA	271	85.01	c.46.1.2,c.46.1.2	32717,32718
2pgzA	230	85.57		
3b8xA	390	85.92		
2vouA	397	86.18	c.3.1.2,d.16.1.2	153389,153390
1sv6A	269	86.45	d.177.1.1	106043