# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3fg8A	118	3.889		
2ph0A	174	13.13		
3ff0A	163	16.15		
2hqvA	195	17.98	e.62.1.2	136674
1mdoA	393	19.50	c.67.1.4	79013
2aioA	269	19.52	d.157.1.1	126829
3cnmA	185	19.57		
1y12A	165	23.68	b.157.1.1	122516
1j6qA	136	25.99	b.40.9.1	77091
2czlA	272	26.97	c.94.1.1	131055
3jrqB	186	27.78		
2it2A	200	30.81		
2wntA	330	31.10		
3jrsA	208	31.19		
3goyA	193	32.49		
1yizA	429	32.87	c.67.1.1	123375
1pbuA	162	35.28	d.58.46.1	88030
2kkuA	161	35.99		
2nwaA	88	37.81	b.122.1.13	148480
3gpuA	256	38.06		
2khaA	130	42.86		
1sr3A	136	43.02	b.40.9.1	98976
2z3yA	662	43.47	a.4.1.18,c.3.1.2,d.16.1.5	154024,154025,154026
2yr5A	721	45.92		
2odtX	328	47.28		
1e0cA	271	47.44	c.46.1.2,c.46.1.2	32717,32718
2otnA	308	48.25		
3itqA	216	48.31		
3kzfA	317	51.50		
1vfjA	116	52.94	d.58.5.1	113637
1si2A	149	53.45	b.34.14.1	105569
2pii	112	53.58		
3dv9A	247	54.62		
2f1nA	262	55.06	d.151.1.1	132782
3kdjA	202	55.20		
3giwA	277	55.84		
2ozlA	365	57.16	c.36.1.11	145744
2bgcA	238	58.63	a.4.5.4,b.82.3.3	128458,128459
1ni5A	433	59.38	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
3dbgA	467	60.25		
2qfdA	145	60.60		
2qnkA	286	60.90		
2o0jA	385	61.81		
1iwlA	182	63.27	b.125.1.1	83757
1pxvA	183	63.47	d.3.1.1	95301
2d29A	387	64.48	a.29.3.1,e.6.1.1	131157,131158
2hhgA	139	65.09		
2w7tA	273	68.30		
2hx0A	154	70.35	d.290.1.3	136830
1t61A	229	70.51	d.169.1.6,d.169.1.6	106529,106530
3guaA	217	72.06		
2ns1B	116	72.78	d.58.5.1	145694
3ii6X	263	77.76		
2j9cA	119	79.34		
1w7lA	422	82.21	c.67.1.1	109226
3mhkA	223	83.53		
1ybyA	215	87.10		
2dxnA	274	89.15	d.159.1.11	146605
2v25A	259	89.79