# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3guaA 217 2.754 3goyA 193 3.155 3ff0A 163 5.251 2heuA 401 5.918 1p22A 435 6.173 a.158.1.1,b.69.4.1 87715,87716 2vvmA 495 6.249 3cnmA 185 6.366 2ovrB 445 6.859 a.158.1.1,b.69.4.1 145735,145736 2z0xA 158 8.147 3ecqA 1531 8.912 3gpuA 256 9.486 2v3vA 723 10.46 b.52.2.2,c.81.1.1 152463,152464 1y12A 165 10.71 b.157.1.1 122516 1jz8A 1023 10.88 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 3hj7A 142 11.54 2vduB 450 11.54 2v25A 259 12.70 3fg8A 118 12.71 1bu6O 501 13.70 c.55.1.4,c.55.1.4 33499,33500 2d29A 387 15.58 a.29.3.1,e.6.1.1 131157,131158 2p8bA 369 16.58 2ph0A 174 16.90 2gjlA 328 17.75 3kxrA 205 18.71 1n7oA 721 19.66 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2z3yA 662 20.07 a.4.1.18,c.3.1.2,d.16.1.5 154024,154025,154026 3kyfA 231 23.34 1vpmA 169 23.45 d.38.1.1 113967 2halA 212 23.75 b.47.1.4 136289 2yr5A 721 24.29 1zunB 434 24.51 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 2dkhA 639 24.71 1uh4A 637 24.91 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 3ei4B 436 26.33 2a2cA 478 26.74 2czlA 272 27.08 c.94.1.1 131055 2pzhA 135 28.14 2nwaA 88 28.97 b.122.1.13 148480 3mhkA 223 29.73 1e9rA 437 29.83 c.37.1.11 64827 3eshA 280 30.43 2hqvA 195 31.83 e.62.1.2 136674 1e0cA 271 33.21 c.46.1.2,c.46.1.2 32717,32718 1yhtA 367 33.50 c.1.8.6 123213 2hx0A 154 34.20 d.290.1.3 136830 2fphX 165 34.84 1wnyA 186 34.88 1a0rB 340 35.23 b.69.4.1 27658 3h7cX 383 35.48 1w18A 493 35.69 2hkdA 320 37.37 1v4pA 157 37.67 d.67.1.2 113533 2f1nA 262 38.33 d.151.1.1 132782 3h6nA 127 39.20 2w3xA 147 39.77 2qdrA 303 41.13 1ztcA 221 42.85 d.157.1.11 125635 1ji1A 637 44.65 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1dqwA 267 45.62 c.1.2.3 28551 3glqA 494 48.02 2pjrA 548 48.09 c.37.1.19,c.37.1.19 32395,32396 3ed3A 298 52.62 3c8yA 574 52.71 c.96.1.1,d.15.4.2,d.58.1.5 156057,156058,156059 2p9wA 334 52.91 2pgeA 377 53.22 2qnkA 286 54.07 2bgcA 238 55.24 a.4.5.4,b.82.3.3 128458,128459 3khdA 520 56.55 1yliA 153 58.77 d.38.1.1 123651 1jmuB 666 59.58 3ikjA 588 60.44 3emhA 318 60.44 1pxvA 183 60.54 d.3.1.1 95301 2rikA 284 61.73 1rx0A 393 62.17 a.29.3.1,e.6.1.1 98007,98008 2o2zA 323 62.57 1ybyA 215 62.76 2gujA 155 64.61 b.106.1.3 147180 2kkuA 161 64.62 1gmxA 108 66.26 c.46.1.3 65355 3k1tA 432 67.51 2o0aA 298 67.55 1jixA 351 67.84 c.87.1.1 63081 3fgbA 361 68.06 2oxcA 230 68.14 1hqlA 257 68.63 b.29.1.1 65907 2khaA 130 70.43 2w7tA 273 70.78 2z1yA 397 71.77 2c27A 315 73.06 d.108.1.1 129659 3bxzA 471 73.13 1si2A 149 73.67 b.34.14.1 105569 1vk4A 298 73.67 c.72.1.1 100850 2pwaA 279 73.70 c.41.1.1 139762 2jesA 503 74.23 1p2xA 159 75.03 a.40.1.1 104062 2ns1B 116 75.05 d.58.5.1 145694 2aioA 269 75.07 d.157.1.1 126829 2it2A 200 75.41 3a11A 338 76.46 3gvjA 670 78.39 1k77A 260 79.60 c.1.15.5 72096 1z54A 132 80.77 d.38.1.1 124450 3kvcA 533 81.22 3fv3A 339 81.96 2otnA 308 82.12 1yl5A 247 82.91 c.2.1.3,d.81.1.3 123617,123618 1ad3A 452 83.42 c.82.1.1 35335 2pii 112 84.62 3claA 213 85.16 c.43.1.1 32610 3il4A 320 85.22 2x00D 227 86.73 1v0eA 666 87.15 b.68.1.2,b.108.1.3 113466,113467 1w2wB 191 88.26 1amuA 563 88.71 e.23.1.1 43351