# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1t5hX	504	1.974	e.23.1.1	106449
1mdbA	539	4.347	e.23.1.1	79008
2j0pA	345	5.628	e.62.1.1	137903
2p3pA	207	6.901	d.383.1.1	149183
1u9tA	354	7.671	e.62.1.1	119651
1amuA	563	8.689	e.23.1.1	43351
1pg4A	652	9.458	e.23.1.1	88067
2w1zA	368	11.27		
3h2uB	283	17.50		
1ujrA	110	18.38	d.289.1.1	113258
3cw9A	504	23.03	e.23.1.1	157035
2krrA	180	23.48		
2q3pA	112	25.37	d.58.4.4	139798
2zc3C	125	29.57	d.11.1.1,d.11.1.1	154325,154326
1px5A	349	30.91	a.160.1.2,d.218.1.6	95277,95278
3f1pB	121	32.14		
2qkpA	151	33.24		
2ph0A	174	33.70		
2qycA	103	34.51		
3ednA	299	35.17		
2z2mC	125	37.28	d.11.1.1,d.11.1.1	153944,153945
1gk9B	557	37.49		
3guaA	217	38.29		
1a9nB	96	41.94	d.58.7.1	39165
1x0pA	143	42.80	d.58.10.2	121552
3ewgA	91	45.44		
1ftrA	296	46.03	d.58.33.1,d.58.33.1	39485,39486
3i6dA	470	48.07		
2gdnA	267	48.68		
1wmsA	177	51.98	c.37.1.8	109414
1qyaA	307	52.89	d.21.1.2,d.21.1.2	104653,104654
2q49A	359	53.26	c.2.1.3,d.81.1.1	139831,139832
3if0X	153	53.48		
1tu1A	148	53.90	d.107.1.3	107316
2bcgG	453	54.43	c.3.1.3,c.3.1.3,d.16.1.6	128282,128283,128284
2qyxA	238	54.98		
1siqA	392	55.24	a.29.3.1,e.6.1.1	105585,105586
1fxlA	167	55.28	d.58.7.1,d.58.7.1	39183,39184
1e5rA	290	55.99	b.82.2.4	59276
3eatX	293	57.52		
2nyiA	195	59.30		
2h18A	193	60.75		
1cr5A	189	61.63	b.52.2.3,d.31.1.1	26931,38465
1x0oA	119	62.89		
1b7fA	168	63.60	d.58.7.1,d.58.7.1	39169,39170
1qcsA	211	63.69	b.52.2.3,d.31.1.1	26927,38461
3bb8A	437	64.12		
2g17A	337	64.47	c.2.1.3,d.81.1.1	134512,134513
2d4gA	171	65.54		
1uzxA	169	66.71	d.20.1.2	100238
2wn9A	228	67.92		
2pw0A	397	68.43		
2w7tA	273	70.64		
2vvlA	495	71.07		
2hq2A	354	71.31	e.62.1.1	136656
1nu4A	97	71.37	d.58.7.1	80731
2b02A	119	72.53		
1zthA	258	73.50		
2p4fA	299	73.82		
1o70A	324	74.91	b.118.1.1,b.118.1.1	81115,81116
2vvmA	495	76.02		
1x7vA	99	76.65	d.58.4.11	109501
1gycA	499	76.83	b.6.1.3,b.6.1.3,b.6.1.3	70748,70749,70750
2rilA	99	78.86		
2pgzA	230	79.50		
3d9tA	97	79.67	g.52.1.1	157463
2rffA	111	79.85		
3ii9A	396	79.94		
1lj5A	379	80.18	e.1.1.1	73928
1ifqA	138	82.42	d.110.4.1	62350
2pzhA	135	82.46		
1d5tA	433	82.81	c.3.1.3,d.16.1.6	30422,37986
1pbjA	125	85.49	d.37.1.1	144366
1ehxA	94	87.86	b.1.18.13	21950
3mcsA	219	88.27		
3i3lA	591	89.97